Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30820 824 / 0 CTP synthase family protein (.1) AT3G12670 811 / 0 EMB2742 embryo defective 2742, CTP synthase family protein (.1) AT4G20320 807 / 0 CTP synthase family protein (.1.2) AT2G34890 749 / 0 CTP synthase family protein (.1) AT4G02120 706 / 0 CTP synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038403 [exp] 1095 / 0 AT1G30820 897 / 0.0 CTP synthase family protein (.1) Lus10010020 [exp] 593 / 0 AT4G02120 624 / 0.0 CTP synthase family protein (.1) Lus10025042 [exp] 549 / 0 AT4G02120 689 / 0.0 CTP synthase family protein (.1) Lus10025043 [exp] 174 / 2e-51 AT4G02120 289 / 1e-96 CTP synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157900 [exp] 882 / 0 AT1G30820 910 / 0.0 CTP synthase family protein (.1) Potri.001G073100 [exp] 865 / 0 AT1G30820 901 / 0.0 CTP synthase family protein (.1) Potri.010G176500 [exp] 839 / 0 AT3G12670 935 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.008G080100 [exp] 827 / 0 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.014G123200 [exp] 728 / 0 AT4G02120 918 / 0.0 CTP synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I CL0023 [flax] [poplar] P-loop_NTPase PF06418 [flax] [poplar] CTP_synth_N CTP synthase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10001218 pacid=23148479 polypeptide=Lus10001218 locus=Lus10001218.g ID=Lus10001218.BGIv1.0 annot-version=v1.0 ATGAAGTATGTACTTGTGACTGGTGGAGTCGTGAGTGGACTCGGGAAAGGAGTCACTGCTAGTAGTATTGGAGTCCTTCTCAAGGCTTGTGGCCTTCGTG TTACCTCCATCAAAATCGATCCTTACTTGAACTTTGATGCTGGAACAATGTCACCTTTTGAGCATGGCGAAGTGTTTGTCCTGGACGACGGGGGTGAGGG TGTCATGGACAAAGAGAGAAGGGGAGACTATCTGGGAAAGACCGTACAGTATGTGCCTCACGTTACAGATGCCATTCAAGAATGGATAGAACGCGTTGCC TTGGTGCCTGTCGATGGAAAGCAAGGTCCTGCTGATGTCTGCGTCATTGAATTGGGTGGAACAATCGGAGACATCGAAGGCAAACCATTTATTGAGGCTC TGAGCCAGTTTTCCTACAGAGTTGGTGCTGGCAACTTTTGCTTGGTTCATGTTAGTCTTGTGCCTGTTCTGAGTGTTGTGGGCGAACAGAAAACAAAACC AACTCAGCATAGTGTTGGGAATCTAAGAGGCCTTGGATTGACTCCGAATCTCTTAGCCTGTCGCAGCACATTGGCTCTTGAAGAAAATGTAAAAGATAAA CTTTCGAAGTTCTGCCATGTGCCGATCGAACATATTGTCACTCTGTATGATGTTCCCAACATTTGGCACATTCCCTTACTACTACGAGATCAGAAAGCTC ATGAAGCTATTTTGAGCGTTCTAAACCTTCATAGTGTCACTAGGGACCCGGATCTGAGGGAATGGACAGCTAGGGCTGAATTGTGTGATGAATTGCATGA ACCGGTCCGAATTGCTATGGTAGGGAAGTACACAGGTCTTTCGGATGCCTATCTTTCAGTTCTGAAGGCTCTCTTGCATGCATGTGTTGCTCTCCATAAA AAGCCTATCATAGATTGGGTTCCAGCTACAGATCTTGAAGATGAAACAGCAAAAGAGAATCCTGATGCTTATAAAGCTGCATGGAAGTTGCTCAAGGGTG CAGATGGTATTCTTGTGCCTGGAGGGTTTGGCGACAGAGGTGTGCAGGGCAAAATTCTTGCAGCGAAGCATGCACGGGAGAATCGAATCCCTTACCTTGG CATCTGCCTAGGGATGCAAACTGCCGTAATTGAATTTGCACGATCCGTTGTCGGTTTGCAAGATGCTAACAGCACAGAGTTTGATGCTCTCACCAAGAAT CCGTGTGTCATATTTATGCCTGAGGGCTCGAAAACCCAAATGGGAGGCACCATGAGACTCGGGTCAAGGAGGACATATTTTCATGTCACCGACTGCAAAG CCGCTAAGCTATATGGAAATAAAAGTTATGTCGACGAGAGGCACAGACATAGATACGAGGTGAATCCTGAAATGGTAGCACGCTTTGAAGAGGCTGGCCT CTCCTTCACTGGCAAGGATGAGACTGGGCAGCGTATGGAGATCATTGAGCTGCCGAATCACCCCTACTTCATTGGCGTCCAATTCCACCCAGAATACAAA TCAAGACCAGGAAAACCTTCTCCTGTGTTCTCAGGTCTGATAGCAGCAGCATGCGGTCAACTGGAGGGTGTGTTGCAGCAAAGCCACCACCAGAGGGTGG CGAGCAACAACGGTTTCGGTAATGGAGGAAAGGAAAATGGGATTGCGAAGGTAAGCGTCTACCAAAACGGACACCCGACCAAGTTTGCGAAAATGACGAC GAACGGGAATGGTATATACAGCAACGGAGTGCACCACCTCTAA
AA sequence Show only first row Show all	>Lus10001218 pacid=23148479 polypeptide=Lus10001218 locus=Lus10001218.g ID=Lus10001218.BGIv1.0 annot-version=v1.0 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNFDAGTMSPFEHGEVFVLDDGGEGVMDKERRGDYLGKTVQYVPHVTDAIQEWIERVA LVPVDGKQGPADVCVIELGGTIGDIEGKPFIEALSQFSYRVGAGNFCLVHVSLVPVLSVVGEQKTKPTQHSVGNLRGLGLTPNLLACRSTLALEENVKDK LSKFCHVPIEHIVTLYDVPNIWHIPLLLRDQKAHEAILSVLNLHSVTRDPDLREWTARAELCDELHEPVRIAMVGKYTGLSDAYLSVLKALLHACVALHK KPIIDWVPATDLEDETAKENPDAYKAAWKLLKGADGILVPGGFGDRGVQGKILAAKHARENRIPYLGICLGMQTAVIEFARSVVGLQDANSTEFDALTKN PCVIFMPEGSKTQMGGTMRLGSRRTYFHVTDCKAAKLYGNKSYVDERHRHRYEVNPEMVARFEEAGLSFTGKDETGQRMEIIELPNHPYFIGVQFHPEYK SRPGKPSPVFSGLIAAACGQLEGVLQQSHHQRVASNNGFGNGGKENGIAKVSVYQNGHPTKFAKMTTNGNGIYSNGVHHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	0	1
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	1.0	0.9075
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	2.0	0.8652
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	2.4	0.8481
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	2.8	0.8406
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001740 [exp]	3.6	0.8119
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	4.2	0.8651
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	4.7	0.8182
					Lus10038438 [exp]	4.8	0.7628
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	5.5	0.8231
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	6.3	0.8606

Compare expression of checked genes

Lus10001218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.