Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20310 348 / 2e-114 Peptidase M50 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038402 [exp] 436 / 5e-149 AT4G20310 310 / 8e-101 Peptidase M50 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157800 [exp] 534 / 0 AT4G20310 417 / 2e-141 Peptidase M50 family protein (.1.2.3) Potri.001G073200 [exp] 171 / 1e-49 AT4G20310 155 / 3e-45 Peptidase M50 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02163 [flax] [poplar] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Lus10001219 pacid=23148484 polypeptide=Lus10001219 locus=Lus10001219.g ID=Lus10001219.BGIv1.0 annot-version=v1.0 ATGGAGAGGCCGAGAAGGATTAGAACGTTCGGAGGAAGGCGACGGAACCACAGTCTACTTCCACTCCGTTCAGACACCATCAGCCGGATCCCTTCTCTTT CCAACACCATCTCCTGTTGCTACTGTGACTACAAGTTCTCTGCTCTCAACACCTTCCTATTCCGTTTCGGGAGCAGGTATTCCCATCAATTGAGAGTTTG GTTCTCGATCGGCGTCGGATTCAGCCTCGCCGCTCTCGCCGGAGCTACTCTACTTCTTGTTTGGGAGTTGGCTATTTCCCCTGGAACCAGCTCCTCCAAG CTCGACAATCTCGCCGGCTCCTTCTTGTTCGGGATTTCCCCTCAGGTTTACGGTCTGAGTCTATCCATCGGAGATGCCGCTCATCTGTTTTTTGCGACAC TGGTGTCTGTCTCAGTGCACGAATTCGGCCATGCCATTGCGGCAGCTAGTGAGGGCATCCAGGTGGAATATATAGCTGTGTTCATTGCGGTTTTGTTTCC TGGTGCATTGGTGGCCTTCGACTATGAGAAAATCCATGCCTTGGAGAGGATTAATGCTCTTCGTGTATACTGTGCTGGCATTTGGCATAACGCTGCGTGT TGTGCAGTTTGTGGAGTACTGCTGTTTCTGCTTCCATGGATTTTATGTCCCTTGTACGTGCGTAGTGAACACCCCATGGTTCTGTATGTACCCTCTGCAT CTCTTTTATCTGGGTATTTGTCTCCGGGTGATTTAATTGTGTCACTGGATGGCAAACATGTCCACGATGAGCATGAATGGAAGGAGCTGACTACTTTACT TCAAGATCATTCTTTTCAACATTCAAATTTGTTGAACAGCTCGCAAGATTCTGCAGCCTTTCGACTTGAAAAGGGCTACTGTGTTCCTACCTATGTGACG GAAGACAACCGGACCATTCGCTTGGGAGGCCTTCAATACTCATGTCCTGATGGTTTCGCTGAATTTCGGGCTACAGAGTGCCCTGAATCGCATAAATTAG ATGAGGGCTTTATGCAAGCTGAAGGCTCGGAGAAAAGGCTGGAACGGTATTGTCTGACTGATAAAGACATCGTCAGTCTAAATAAATGCGGAAGCGGTTG GCTAGGAGAAATCGGTAAGGGGAGCAGCTGCTCGTGTTCAGAGAGTGAGTCCTGCTTAAGTCCTGTTCAGAAGCCAGGTCTAGTATGGGCTGAGATCACC TATTCTCGACCTTATTCCTCAGAATGCCTACACCTTGATAAAGCTTCTTCTGCAGATTCTGAAACTGTAGACTTGATACCTGACAAGTGTCGTGGAACAT TTGTTTTCATCGGTGATCTGGTGTCCATGGCACATTCAGTCCAGTTAACTTCATACCAACCTCGATATTTATTTCCATTCAGTGCTCATTTCCCCATGGT TCTGGAAAAGGCAGCCATTTGCATCTTCTACGTTTCTCTAACTCTAGCTCTCCTAAACAGTTTGCCGGTATGTTATCTGGACGGCGAGTCTATTCTCGAG CTAGCACTGAGCTACTTCACCTGCCTGCGACCGAGTAGGAGAGCAAAAACTCTCCGGGCATGTCTCATTTGCGGGACACTCATTTCTTTAGTGGCCTTTC TGAAGATCCTCATCTTTACCGTCTTCACTGGACACACTATGTAA
AA sequence Show only first row Show all	>Lus10001219 pacid=23148484 polypeptide=Lus10001219 locus=Lus10001219.g ID=Lus10001219.BGIv1.0 annot-version=v1.0 MERPRRIRTFGGRRRNHSLLPLRSDTISRIPSLSNTISCCYCDYKFSALNTFLFRFGSRYSHQLRVWFSIGVGFSLAALAGATLLLVWELAISPGTSSSK LDNLAGSFLFGISPQVYGLSLSIGDAAHLFFATLVSVSVHEFGHAIAAASEGIQVEYIAVFIAVLFPGALVAFDYEKIHALERINALRVYCAGIWHNAAC CAVCGVLLFLLPWILCPLYVRSEHPMVLYVPSASLLSGYLSPGDLIVSLDGKHVHDEHEWKELTTLLQDHSFQHSNLLNSSQDSAAFRLEKGYCVPTYVT EDNRTIRLGGLQYSCPDGFAEFRATECPESHKLDEGFMQAEGSEKRLERYCLTDKDIVSLNKCGSGWLGEIGKGSSCSCSESESCLSPVQKPGLVWAEIT YSRPYSSECLHLDKASSADSETVDLIPDKCRGTFVFIGDLVSMAHSVQLTSYQPRYLFPFSAHFPMVLEKAAICIFYVSLTLALLNSLPVCYLDGESILE LALSYFTCLRPSRRAKTLRACLICGTLISLVAFLKILIFTVFTGHTM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	6.5	0.8128
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	7.7	0.8195
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	8.1	0.8275
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	8.9	0.8179
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	9.7	0.8146
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	11.5	0.8062
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	11.7	0.8256
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	19.9	0.8014
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	20.4	0.8054
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	21.0	0.7950

Compare expression of checked genes

Lus10001219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.