Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57430 1078 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 585 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 579 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 578 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 549 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 537 / 2e-178 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 534 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 530 / 1e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 529 / 1e-175 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 524 / 4e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038400 [exp] 1587 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 597 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 595 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 582 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 581 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 580 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 566 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 558 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 556 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075800 [exp] 1206 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 612 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 612 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 595 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 588 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 586 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 566 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 565 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 548 / 0 AT3G22690 582 / 0.0 unknown protein Potri.003G164900 [exp] 539 / 1e-179 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001220 pacid=23148485 polypeptide=Lus10001220 locus=Lus10001220.g ID=Lus10001220.BGIv1.0 annot-version=v1.0 ATGTCATCTCCCTACGCTCTGCAACCTCTTGCATCAATCTCCCTTCCCTCACCGGCGGCTCCTCCGTCTCATCAAACTCACCGGCCCACATTACCGCTGC ACAACCACTCCTCTCCTCACCCTCCTCTCTCTACTCCGGAGCCTTCCACTTCCAGTTATAGGCCTCAGAACTGGTGGGTGGATTCCGTACGCTCCAAAAC CCGCTCCAAGCACTTCCACGAAGCTATTTCCATCTACAACGAAATGATCCTCTCAGGTACTCAGCCAGATAGTTTCATCTTCCCCACGGTTCTCAAGGCT GTTGCCTCTCTTCAGGACTTGCGTTTGGGGAAGCAGATTCACGCCCACGCTGTTAAATTCGTGCATGGAGGAGCCTCTGTCGTCAGTGTAGCTAATTCGC TTGTGAATCTGTATGGGAAATGTGGAGAGCTAAATGATGCACGGAAGGTGTTTGATGAAATTACTGAGAGAGACGCTGTTTCATGGAATTCGATAATTGC TGCTCTATGTAGAGATGAGGAATGGGAGGATGCCCTGGAATCGTTTCGATTGATGCTGGCTGAGAATCTCGAGCTTAGTTCATTTACATTGGTGAGTGCG GCACTTGCTTGTTCGAACTTGCACAAGGGTGATGGATTGCCACTTGGGAAGCAACTCCATGGGTACAGTCTCAGGACGAGTCGCTGGAAGGAAACGTTCA CTAACAACGCTTTGATTTCTATGTACGCTAAGCTGGGGAGAGTAGACTATGCCAAAAGTATGTTTCAGTTATTCGAGGGTCGCAACTTGGTTTCGTGGAA CACCATGATAAGCTCGTTGACGCAGAACAAAAGGTTCATGGATGCTCTAGTTTCATTGCAGCTTATGGTTCGTGAAGGAATCAAAGCCGATGGGGTTACG TTAGCAAGCGTTCTTCCAGCTTGCTCTAGCTTGGAGATGTTAGCTTCCGGGAAGGAGATCCATGCTTATGCCTTGAGAAATGGGGAGCTGATTGAAAACT CGTTTGTTGGTAGTGCTTTGGTTGACATGTATTGCAACTGTGGACAGGTTGAAACTGGGCGTCGGGTTTTCGATCGTATCTTGGATCGGAGGATTGGTAT TTGGAATGCCATGATTACGGGATATGCACAAAACGAGAATGATGAGCAGGCCGTGGCGCTCCTCCTTGATATGGAGACAGATTCCGGACTCCGCCCCAAT GCAACCACAATGTCCAGTGTCGTACCTGCTTGTGTTCGGTCTGAAGCATTCTCTGCTAAAGAAAGCATTCACGGATTTGTTGTGAAGATGGGTCTCGAGA CTAATCGGTATGTGCAGAATGCACTCATGGATATGTACAGCAGAATGGGGAGGATGGAAATTTCAAAGTTGATATTTGATAGCATGGAGGTTAGAGATGT AGTTTCCTGGAACACTATGATCACTGGCTATGTCATTAAGGGATGCTTCGATGAGGCACTCTCGATGCTACAAGCGATGCAGAAAACAGAACTTAGACCT AATTCGATAACCTTGATGACAATGCTTCCTGGATGTGCTTGGATGGCAGCACTAGCCAAAGGGAAAGAGATCCACGGTTATGCAATTCGAAACGCATTGG CTTCCGATGTTGTGGCTTTCGATGTTGCGGTCGGGAGTGCACTAATTGACATGTATGCAAAATGTGGATGCTTGGACTTAGCTAGGAGAGTGTTTGATGA AATGCCTAGAAAAAATATAGTCACTTGGAACGTAATAATGATGGCCTATGGGATGCATGGGAAAGGAGAGGAAACATTGCAACTTTTTCAAGACATGGTG TCTGAATCCAAGGTTGGAGGAGTGAAGCCTACTGAAATCACTTTCATATCAGTGATTGCTGCTTGCAGTCACTCAGGTATGGTGGACGAGGGACTTGGCA TATTCCGTAGCATGAAGGATCACCATGGGATTGAAGCTACAGCAGATCACTATGCTTGCATAGTCGACTTACTTGGTCGAGCCGGTCGAGTGGAGCAAGC TTACAAGCTAGTTAATTCAATGCCATCTGGTTTCGATAAGATAGGGGCATGGAGTAGCTTACTTGGAGCTTGTCGACTGCACCAGAAAGTCGAAATCGGT GAAATTGCTGGAGAAAGTCTCATCCGGTTGCAACCAGACGTTGATAGCCACTATGTTCTACTCTCCAATGTATACGCAACTGCTGGCTTGTGGGAGAAGG CAATGTCTGTTAGAAAAAGGATGGGCGATTTAGGAATGAAGAAAGTTCCCGGATGGAGTTGGATCGAGAACCGAGATGAAGTGCACAGGTTTCTCGCTGG TGACAACTCACACCCGCAAAGTGAAGAGATCCACAGCTTCCTCGAGGTGCTATTGGCAAGAATCAGAAAAGAAGGGTACATCCCCGACACTTCCTGCGTA CTTCACGATGTTACCGAAGATGAGAAAGAGAAACTACTCTGCGGGCATAGCGAGAAGCTCGCGATAGCATTTGGCATCCTCACCACCCCACCTGGAACCA CCATAAGAGTGGCTAAGAACCTCAGAGTGTGTAACGACTGCCATAATGCGTCAAAGTACATTTCCAAGGTTGAGCAAAGGGAGATCATTCTAAGAGATGT AAGAAGGTTCCATCACTTCAGTAATGGAAATTGTTCATGTGGTGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10001220 pacid=23148485 polypeptide=Lus10001220 locus=Lus10001220.g ID=Lus10001220.BGIv1.0 annot-version=v1.0 MSSPYALQPLASISLPSPAAPPSHQTHRPTLPLHNHSSPHPPLSTPEPSTSSYRPQNWWVDSVRSKTRSKHFHEAISIYNEMILSGTQPDSFIFPTVLKA VASLQDLRLGKQIHAHAVKFVHGGASVVSVANSLVNLYGKCGELNDARKVFDEITERDAVSWNSIIAALCRDEEWEDALESFRLMLAENLELSSFTLVSA ALACSNLHKGDGLPLGKQLHGYSLRTSRWKETFTNNALISMYAKLGRVDYAKSMFQLFEGRNLVSWNTMISSLTQNKRFMDALVSLQLMVREGIKADGVT LASVLPACSSLEMLASGKEIHAYALRNGELIENSFVGSALVDMYCNCGQVETGRRVFDRILDRRIGIWNAMITGYAQNENDEQAVALLLDMETDSGLRPN ATTMSSVVPACVRSEAFSAKESIHGFVVKMGLETNRYVQNALMDMYSRMGRMEISKLIFDSMEVRDVVSWNTMITGYVIKGCFDEALSMLQAMQKTELRP NSITLMTMLPGCAWMAALAKGKEIHGYAIRNALASDVVAFDVAVGSALIDMYAKCGCLDLARRVFDEMPRKNIVTWNVIMMAYGMHGKGEETLQLFQDMV SESKVGGVKPTEITFISVIAACSHSGMVDEGLGIFRSMKDHHGIEATADHYACIVDLLGRAGRVEQAYKLVNSMPSGFDKIGAWSSLLGACRLHQKVEIG EIAGESLIRLQPDVDSHYVLLSNVYATAGLWEKAMSVRKRMGDLGMKKVPGWSWIENRDEVHRFLAGDNSHPQSEEIHSFLEVLLARIRKEGYIPDTSCV LHDVTEDEKEKLLCGHSEKLAIAFGILTTPPGTTIRVAKNLRVCNDCHNASKYISKVEQREIILRDVRRFHHFSNGNCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	0	1
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	1.4	0.9679
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	2.2	0.9577
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	2.8	0.9678
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	2.8	0.9600
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	3.0	0.9667
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	3.0	0.9495
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035588 [exp]	3.5	0.9442
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	4.2	0.9570
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	4.7	0.9462
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	5.9	0.9500

Compare expression of checked genes

Lus10001220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.