Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001222 pacid=23148488 polypeptide=Lus10001222 locus=Lus10001222.g ID=Lus10001222.BGIv1.0 annot-version=v1.0 ATGCATTGGAAAGGAGAAAAGGACTGTGAAGGTGTACCAATGCAGACTTTTCCCTCTTGGATACCGACTTACTATCAGTTCCTCAGTTACCAATACAGAC TTTTTCCTCTTGGATATGCCGAGCCCGAGCGGACTGTGGTCATCAGTCAATCAAGTTCTTGCAACGTGCGATGCTGCTACCCATTAAATAAACCTCATAC TTCTGAAAGGCATAGACCTCTATATCGGAAAGTTCGGTTGCTAAAAGGTACAGACATGGTGTACTGTACTAATGGATGCAGGACAAACAACCCAACTGGC ACCAGAGCCAGGATTCATCTACCAGAACTATTTTCAGGATTGTGGATTATTGATACCGTTACTTTGAATGTGAACAATCGCAAGGTGAAGAAACACCATC GAGCAATCAATCTCGATGATAACTCAACTGCCACATTAGCGCTTAACGAAATTATTGATAGAGTTCGACAGAAAATGTAA
AA sequence Show only first row Show all	>Lus10001222 pacid=23148488 polypeptide=Lus10001222 locus=Lus10001222.g ID=Lus10001222.BGIv1.0 annot-version=v1.0 MHWKGEKDCEGVPMQTFPSWIPTYYQFLSYQYRLFPLGYAEPERTVVISQSSSCNVRCCYPLNKPHTSERHRPLYRKVRLLKGTDMVYCTNGCRTNNPTG TRARIHLPELFSGLWIIDTVTLNVNNRKVKKHHRAINLDDNSTATLALNEIIDRVRQKM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001222 [exp]	0	1
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	5.4	0.9085
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	7.3	0.9021
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	10.0	0.9055
AT1G76480			unknown protein		Lus10006035 [exp]	10.4	0.9014
					Lus10014678 [exp]	13.9	0.8948
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	16.7	0.8808
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	19.3	0.8600
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	21.3	0.8867
AT1G30140			unknown protein		Lus10024751 [exp]	23.0	0.8984
					Lus10019353 [exp]	23.1	0.8662

Compare expression of checked genes

Lus10001222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.