Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 49 / 2e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40400 48 / 2e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G37230 44 / 7e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 43 / 0.0001 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 43 / 0.0001 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18020 43 / 0.0001 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19890 40 / 0.0008 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038398 [exp] 433 / 5e-156 AT4G20090 52 / 2e-07 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 46 / 1e-05 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 45 / 3e-05 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018567 [exp] 45 / 4e-05 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 45 / 4e-05 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039056 [exp] 44 / 6e-05 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 44 / 0.0001 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017675 [exp] 42 / 0.0004 AT1G06270 397 / 1e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 41 / 0.0008 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075700 [exp] 244 / 2e-81 AT4G20090 65 / 7e-12 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 50 / 8e-07 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 45 / 2e-05 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 44 / 4e-05 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 44 / 7e-05 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G043101 [exp] 44 / 8e-05 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 42 / 0.0002 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G057900 [exp] 42 / 0.0003 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139200 [exp] 40 / 0.001 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001223 pacid=23148478 polypeptide=Lus10001223 locus=Lus10001223.g ID=Lus10001223.BGIv1.0 annot-version=v1.0 ATGAATTCATTGAGACAGTGCCACCACCTACGATCTCTGACCTTCCTTTCGAGATCGATCACCTCCTTCCGAGTTTTACAGCATGGAGAATCAACAGCCT TTACCAACACACAACCAACAACGCTCACCAACGAAGAGATAACCAAAATCAACCTCCTAATCCCACGGCTATGCATCGTCTCCGAGAACCTCCCCACAGC AATCCACCTCATAACAACAGCACTCCTCACGAACCCACCTCCAAAGTCCTTATCTTTATCCATCTTCATCCACTCCCTCACCTCAGAGCCTGACATGGCC AAACCCATGTCACTCCTCACAGTTCTAAGGCACAACCCATCTGCACATTCCTACCAGAGCCCCATCGCATCATTGCTCATCTCCTCTTACTTGAAAAGAA ATCGACCCAAAGAGGCACTGAAAGTGTATCACTGGATGGTTAGGCCTGGCTCTCTTTGTAAAGTGGAGAAGACTGTCTATGGGATTTGGCTTTATGGGCT TTGCAAGCTAGGGTTGGCTTTTGAATCCTTGAAGATTTTGAAGGACATGATGGGTGTGGGAGTTATTCCTGGGGATGGATTGAGGAAGATGGTTGTGAGG AACTTGCTGTGGGAAGCTAGAGTTACTGAGGCAGTTGAGCTTGATGCTGCCTTGAGTGGCTGCTGCATTGATGGTGAGGGTTTTGAGAAATTGATGAGTC TTTTAGATTCTTTGGCTGAGAATTGGAGAGACTAG
AA sequence Show only first row Show all	>Lus10001223 pacid=23148478 polypeptide=Lus10001223 locus=Lus10001223.g ID=Lus10001223.BGIv1.0 annot-version=v1.0 MNSLRQCHHLRSLTFLSRSITSFRVLQHGESTAFTNTQPTTLTNEEITKINLLIPRLCIVSENLPTAIHLITTALLTNPPPKSLSLSIFIHSLTSEPDMA KPMSLLTVLRHNPSAHSYQSPIASLLISSYLKRNRPKEALKVYHWMVRPGSLCKVEKTVYGIWLYGLCKLGLAFESLKILKDMMGVGVIPGDGLRKMVVR NLLWEARVTEAVELDAALSGCCIDGEGFEKLMSLLDSLAENWRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	2.2	0.8553
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	4.6	0.8488
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	4.7	0.8810
					Lus10019353 [exp]	5.1	0.8762
AT3G14640		CYP72A10	"cytochrome P450, family 72, s...		Lus10019354 [exp]	10.2	0.7880
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	12.0	0.8616
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	13.7	0.8138
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	17.1	0.8129
AT1G76480			unknown protein		Lus10006035 [exp]	21.0	0.8607
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	21.0	0.8479

Compare expression of checked genes

Lus10001223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.