Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17370 295 / 3e-94 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 57 / 3e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 54 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038394 [exp] 362 / 2e-124 AT5G17370 122 / 6e-32 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 61 / 1e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 61 / 2e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 56 / 5e-08 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 56 / 5e-08 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037378 [exp] 47 / 3e-05 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1) Lus10032062 [exp] 45 / 0.0001 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 43 / 0.0004 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075300 [exp] 387 / 1e-130 AT5G17370 436 / 6e-149 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G155900 [exp] 121 / 2e-32 AT5G17370 157 / 6e-46 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 62 / 5e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 61 / 8e-10 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 57 / 3e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.017G014700 [exp] 42 / 0.0009 AT4G28450 798 / 0.0 nucleotide binding;protein binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001227 pacid=23148487 polypeptide=Lus10001227 locus=Lus10001227.g ID=Lus10001227.BGIv1.0 annot-version=v1.0 ATGCTAATAACTGATTATAATGAAACTGTGATTGTGTGGCCAGAGCTTCCGGGGTTTTACTATGACGCGGTGAAGAACAGATACTTCCCTCTCAAAGGCC GAATTCCTGGCTCTTCTTCTTCTTTTTCATCTGCTGCTCCTGATAGTCAAATCCCTAAAAAAGCAAAGACTTCTCAGGATGACAATATTTGCAAGACTAG AGTAAGAACATATCGACTGATTCAGCAGAGGGAGTTAAATGGCAATGTGGTTTCTGTTGGTAAATCAAAGTATAATGTTGTCCATGAATGCCAGAAGGCA CAAGCATCACAGCCTACGATTTGGAGGTATGAGGGGTCTTCAATTTCGTCATGTGATGCTGGCTTGGACGAGGTGAGTATTCCAATGGAAACGCCAGATG GTCTAGTAGATCAGAAAGTTCTTCTGGCAGGAAGTCAAAATCAATGCTTGAGTATTATAAATGTTTTTAAAGGTGAACAACATTTGTTTCATGCGCCAAA CGCTGCCATGGCAGATCGTGTCTGGCCTGCAGCAGCATCAGAAATAACAAGATGCAGTAAAGCCCCTGAGCAAGTCTGTGTGTGGTTAAATTATCATATG GATTCAGCCATTTCTTCCTTGGCTCAATCCTTAACTAAGCACAGGTTGACTACTCTTGGATCTGAAAGAACCAAAGGTGCTGTTTGGATTCTTAATTTGG CGGGTGTACCGGATGCTCTTCAATTTCCTTCTAAGATAGCTTCTTTGAACTGCACTATCTGGACAGCAGATTGCAACTCCAATGCTAGAACAAGTAAAGG AGCTTATGCGGTCCGTTTGGAAACTGGCGCTTCATCACGGCTGCTTCGGAGTAAAAGTGATGTTTTGTCTCAGCAACTTGATAAGCAGGGAAATATCGTT CTATGTGGACTGCGAAACGGGCAAATCTTGACGGTTGATGCTCGTGTGAATCTAGCAACTCAGAGAGGTAATGGTAATATAGATCCATCTTCCACTATTC GCATGCCTTCATCTGTGTGCAGTTTGGTATCACTTCAACTTTACGACCAATATTTTTTCGCCGGTTCCATGGATGGGACGGTCAAGCTATACGATCATCG CATGACGAAGAGAGGCGCAATACAGGTTTACGAGGGCCATGTGAACTCTCATACAAGATTACCGCTTCGAGCTGATCCTTCGGAGCGGTTTCTCGTAGCA GGTGGAGAAGACTGTCATTTACGCCTCTGGAGTATCAAGTCTGGTGAACTGCTGTTTGATGAAAAGCTCCAACCCGATTTTCTTGCAGGGTTATGGCAGG ACTTAGGGGACCGTGGAACCAAAGAAGATCATTTATCTGGAGCTAACCCGAGCTTTCGGGCATGGTGTGGACTTCGAGAAGGACTTGTCTATGCAAGCTG GCCTTGA
AA sequence Show only first row Show all	>Lus10001227 pacid=23148487 polypeptide=Lus10001227 locus=Lus10001227.g ID=Lus10001227.BGIv1.0 annot-version=v1.0 MLITDYNETVIVWPELPGFYYDAVKNRYFPLKGRIPGSSSSFSSAAPDSQIPKKAKTSQDDNICKTRVRTYRLIQQRELNGNVVSVGKSKYNVVHECQKA QASQPTIWRYEGSSISSCDAGLDEVSIPMETPDGLVDQKVLLAGSQNQCLSIINVFKGEQHLFHAPNAAMADRVWPAAASEITRCSKAPEQVCVWLNYHM DSAISSLAQSLTKHRLTTLGSERTKGAVWILNLAGVPDALQFPSKIASLNCTIWTADCNSNARTSKGAYAVRLETGASSRLLRSKSDVLSQQLDKQGNIV LCGLRNGQILTVDARVNLATQRGNGNIDPSSTIRMPSSVCSLVSLQLYDQYFFAGSMDGTVKLYDHRMTKRGAIQVYEGHVNSHTRLPLRADPSERFLVA GGEDCHLRLWSIKSGELLFDEKLQPDFLAGLWQDLGDRGTKEDHLSGANPSFRAWCGLREGLVYASWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	2.4	0.8702
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	6.7	0.8322
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	7.5	0.8218
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	13.4	0.8506
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	13.7	0.8292
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	17.0	0.8199
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10033155 [exp]	18.2	0.7578
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	19.2	0.7997
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	21.3	0.7897
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	32.3	0.7892

Compare expression of checked genes

Lus10001227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.