Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30870 340 / 3e-116 Peroxidase superfamily protein (.1) AT3G03670 234 / 5e-75 Peroxidase superfamily protein (.1) AT5G17820 234 / 6e-75 Peroxidase superfamily protein (.1) AT2G18140 233 / 3e-74 Peroxidase superfamily protein (.1) AT2G18150 232 / 5e-74 Peroxidase superfamily protein (.1) AT5G66390 231 / 1e-73 Peroxidase superfamily protein (.1) AT1G05250 230 / 3e-73 Peroxidase superfamily protein (.1) AT1G05240 230 / 3e-73 Peroxidase superfamily protein (.1) AT4G36430 229 / 6e-73 Peroxidase superfamily protein (.1) AT5G64120 229 / 6e-73 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038393 [exp] 605 / 0 AT1G30870 350 / 7e-120 Peroxidase superfamily protein (.1) Lus10041784 [exp] 232 / 6e-74 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10012684 [exp] 231 / 9e-74 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10015127 [exp] 228 / 2e-72 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 227 / 3e-72 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 227 / 3e-72 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 226 / 9e-72 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10010634 [exp] 224 / 7e-71 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10031664 [exp] 221 / 4e-70 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156100 [exp] 427 / 7e-150 AT1G30870 352 / 8e-120 Peroxidase superfamily protein (.1) Potri.010G175100 [exp] 383 / 6e-133 AT1G30870 299 / 5e-100 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 250 / 2e-81 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 248 / 3e-80 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 248 / 3e-80 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 248 / 3e-80 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 248 / 3e-80 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 247 / 7e-80 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 241 / 1e-77 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 236 / 1e-75 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10001228 pacid=23148486 polypeptide=Lus10001228 locus=Lus10001228.g ID=Lus10001228.BGIv1.0 annot-version=v1.0 ATGAGGACCTTCGTTTTCATCTTCGCCATTCTTTGCTTCCGATCGGCATTGGCCGATGTCAACTCCGACGAAAACAACAACAACGATGAAGCAATAACAC TACAAGTGTCGACGTTGCTCGACACTTCTTCCTCCGACAATGATTTGCTGTCATTTGCCTACTACCAGGGTACTTGCCCCGAAGCTGAAGGCATTATCAA CCGTAAAGTTCGTGATTGGGCCAAAAAGGATTCGACTCTCGCTGCTAGCCTCATGCGCCTCCACTTTCACGACTGTGCCGTTAGGGGTTGTGATGCTTCA ATTCTACTGAGCAACGTAGGAAGCGAGAGGACAGCACATGCCAGCAAGACCCTGCGTGGGTTTGAAGTGATAGACGACATCAAGAAGGAACTCGAAAGCA AGTGCCCCAAAACGGTGTCGTGCGCCGACATTCTGACCGCAGCCTCACGAGACGCTACCGTTATTATGGGAGGTCCGTACTGGTCAATTCCCTACGGGAG AAAAGACGGGAAAGTTTCTATCGAAAAGGAAGCCGAATTGGTGCCGATGGGTCGCGAAAACATTACCACCCTCATCCAGTTCTATCAGTCTAAAGGCCTC AACGTGCTTGATCTTGTTGCTCTCTCAGGAGCGCATACAATTGGTCGGGCGAGCTGCGGGGCGATTCAGGACCGGATCTACTACTACAAAGGAAGTGGAG AATCAGATTCATCGATGGACAAGAAATACTCAAACTATCTTACCAGGAAATGCAGGTGGGGTTCGGACTACGTTGAGCTTGATGCCATAACGCCAGACAA GTTCGACAACCAGTACTACAAGAATCTACAGAGGAAGATGGGACTCTTGCGGACTGATCAAGCCATGTACGCTGATTCCAGGACTTCCCCCTTCGTCAAC GCGTTGGCTTACGCGCCACCTTCGGTGTTTTACAACCAGTTCGCTGCGTCAATGGCCAAGCTTGGCAATGTAGTTGAGGTTGTGGGTGATGGCGAGGTGC GGACCAACTGCAATTATGTCAACTCTGTCCATTACTGA
AA sequence Show only first row Show all	>Lus10001228 pacid=23148486 polypeptide=Lus10001228 locus=Lus10001228.g ID=Lus10001228.BGIv1.0 annot-version=v1.0 MRTFVFIFAILCFRSALADVNSDENNNNDEAITLQVSTLLDTSSSDNDLLSFAYYQGTCPEAEGIINRKVRDWAKKDSTLAASLMRLHFHDCAVRGCDAS ILLSNVGSERTAHASKTLRGFEVIDDIKKELESKCPKTVSCADILTAASRDATVIMGGPYWSIPYGRKDGKVSIEKEAELVPMGRENITTLIQFYQSKGL NVLDLVALSGAHTIGRASCGAIQDRIYYYKGSGESDSSMDKKYSNYLTRKCRWGSDYVELDAITPDKFDNQYYKNLQRKMGLLRTDQAMYADSRTSPFVN ALAYAPPSVFYNQFAASMAKLGNVVEVVGDGEVRTNCNYVNSVHY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	0	1
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	1.0	0.9595
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	2.4	0.9446
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	2.4	0.9506
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	2.8	0.9288
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10008588 [exp]	4.8	0.7874
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	4.9	0.9414
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	5.2	0.9253
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	5.5	0.9337
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	5.9	0.9381
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	6.3	0.9241

Compare expression of checked genes

Lus10001228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.