Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19720 887 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G57430 400 / 2e-125 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 394 / 1e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01030 391 / 1e-123 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G18485 390 / 5e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 381 / 2e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55740 374 / 2e-116 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 374 / 2e-116 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 373 / 2e-116 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G52850 374 / 2e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014707 [exp] 438 / 3e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 438 / 3e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 411 / 1e-129 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 404 / 3e-127 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040917 [exp] 408 / 7e-127 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 391 / 4e-123 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 396 / 2e-122 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 390 / 1e-121 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 389 / 1e-120 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G030200 [exp] 1036 / 0 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G215500 [exp] 435 / 5e-138 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G097000 [exp] 419 / 2e-132 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 419 / 5e-132 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 403 / 9e-127 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 405 / 1e-126 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 404 / 1e-125 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 393 / 4e-121 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 385 / 4e-121 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G184800 [exp] 384 / 1e-119 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001230 pacid=23182144 polypeptide=Lus10001230 locus=Lus10001230.g ID=Lus10001230.BGIv1.0 annot-version=v1.0 ATGATTGTGCTCAGTCCTCCAAACCCTCATTTCTCTTCTAATCCACCCAAACCGGACAATTCGCCGGGAACATCCTCCGTCAAGAAGCCACGGGCAGCAA TTACAGACTCTTACCTGACTCATCTCTGCAGAAATGAGCGCTTAAGTGATGCTGTCAATGCTCTCGACTCCTTGGCACAATATGGGTTTAAGGTAAAAGC TGCAACCTTGATTGTACTGCTTCAGTCTTGCATTGAATCCAATTCACTTGATCTGGGTCGCAAGGTTCACGCCAGAATTGACTTGGCGGAGGAGCAGTCG GTGTTTCTTTGGACGAAGCTTGTTGGGATGTATGCCAAGTGCGGGAGTTTTATTGATGCGCGCAAGGTGTTTGATGAAATGCGTGAGAGAAATCTGTACA CTTGGTCTGCTATGATTGCAGCATGCTGCAGAGAGAAGAGGTGGGAGGAAGTCATGGACCTTTTCTACTCAATGACGAGAGATGGTATTTTGCCCGATGG CTTTCTGCTGCCCAAGATACTTCAGGCTTGCGCTAACTGTGAAGATTTCGAAACCGGGAGGTTGATACATTGTTTGGCAGTCAAGTGCGGACATAGTAGC TCCCCCCTGGTGACCAATTCGATTCTGGCCATGTATGCAAAATGTGGAAAACTGGACTTAGCCTTACAGTTTTTTCAGCATGTGGATAAGACTGATATAG TTGCTTGGAATTCCTTGATAAGAGGTTATTGCCTGAAAGGTCAGATCGAAGAGGCCCTTCATTTGTTTAATGCAATGTGCAAAGAAGGGGTTGAGCCAAA TTCTTTAACTTGGACTATATTGGGGACTGGGTATCATAACATTGGACACTCTGATGTTGCTCTAAATATTATGAAAGAGATGGAGAGTTCCGGTATAGAA ATAGATGTTGTTGCTTGGACTAGTATGATTTCTGGCTATGCTCAAAGCAACAGACAACAAAGTCAGGCAATGAGTTTATTCAAAGAGATGGTATCCGCAG GGGTTAAACCAAATGGAGTTACTACGGCTGTCGCAATTTCAGTTTGTGCATATATGAGATGGTTAAACAATGGGCTGGAGATTCATGCTTTTGCTATTAA GATGGGTTTCATTGATGATGGCGTACTTGTTGGGAATTCACTCATTGACTTCTACTCAAAGTGTGAGAAGCTGGAAGCTGCCCAGGAAGTCTTTGATATT ATGCTAGAGAAAGATGATTATACATGGAACTCAATGATTGGAGGATATATCGAAGCAGGATATTATAGGAAAGCGTATGAATTATTTGCCAAGATGCAAA AATCTGACATTCAACCTACTGTTGTCACTTGGAATACATTGATATCAGGATTTATGCAAAACGGAGACGATGAGGAAGCCATTGATATGTTTTATAGGAT GGAAAAGGATGCAAAAACAACACCCGACACTGCATCATGGAATGCTCTTATTGCTGGTTACTCGAAGACAGGACAGCAAGAAAAGGCAGTGCGTGTATTT AGACAAATGCTGTCTTCTGGTTTCAGTCCCAATATTGTATCAATATTGAGCGTCTTGCCTGCAGTCGCAAATTTAATTACTCTGCGAAAGGTCAAAGAGC TCCATGGCTTTCTGTTACGGAGAAATCTAGAAGCTTCGATATCCATTTCAAATTCACTTATTGACAGTTATGCTAAATCGGGGAAATTAGGATATTCAAG GACCTTATTTGGACAAATGAATTACAAAGATTCCATTACCTGGGACTCGATGATTGCTGCGTACGTTGCACATGGTTTTTCTGATGCTGCCCTTAAGCTT GGTGATGAGATGTTGGCACAGGGATTGCCGCCAAACAAAGGTACTTTCGTCAATATAATTCGTGCTCATAGCCTTAATGGATGTGTTGATGAGGGTAAGC ATGCACTAACGCGCATGATGGAAGAATATCAACTCACTCCAGGAACTGAAAACTATTCAGCTATCGTAGATCTCTATGGTCGTGTAGGCAGGCTGGAAGA AGCAATCAGATTCATCGAGGCTATGCCAATTAAGGCTGATTCATCTGTGTGGTGTAAGTTATTCACTGCCTGCAGAGTTCATGGCTGTCTAGATTTGGCA ATCCATGCAGGGGAGAATATTCTTGGCTTGGACCCAGGGAATTCATTGGTTCGCCATTTACTTCTTCAAACATACACTTTGCGTGGCAAACCAGAAGATG TGTTGAGAGTGAAATGGATCCAAGATTCACACCAACCACCCAAACTTATTGGGGAGAGCTGGGTAGAAATAGAAAATACAGTTCATTCTTTTGCTTCGGG TGATCAGTCTAAACCTTACTCGAGCCGTCTGGTTTCTTGGATAGATTGCATATCTAAAGAAATCAAAGAAAAAGACTTCCAAGGCTTATGGATAAGTGAT GATGAGAATGAAGACGTTATTGGGCTTCACAGTGAAAAGCTTGCTTTAGCTTTCACATTTGTATGCTCTGCAGTGACGCCTCAAACTGTCAGAATTCTGA AAAACACGAGAATATGTGGAGACTGTCATCGGATGGCTAAATATATTTCTCTGAAATATGGATGTGAGATATATGTGAGTGACACCAAGTGCATTCACTA CTTTAAAGGTGGGCATTGTTCGTGCGGTGATTACTGGTAG
AA sequence Show only first row Show all	>Lus10001230 pacid=23182144 polypeptide=Lus10001230 locus=Lus10001230.g ID=Lus10001230.BGIv1.0 annot-version=v1.0 MIVLSPPNPHFSSNPPKPDNSPGTSSVKKPRAAITDSYLTHLCRNERLSDAVNALDSLAQYGFKVKAATLIVLLQSCIESNSLDLGRKVHARIDLAEEQS VFLWTKLVGMYAKCGSFIDARKVFDEMRERNLYTWSAMIAACCREKRWEEVMDLFYSMTRDGILPDGFLLPKILQACANCEDFETGRLIHCLAVKCGHSS SPLVTNSILAMYAKCGKLDLALQFFQHVDKTDIVAWNSLIRGYCLKGQIEEALHLFNAMCKEGVEPNSLTWTILGTGYHNIGHSDVALNIMKEMESSGIE IDVVAWTSMISGYAQSNRQQSQAMSLFKEMVSAGVKPNGVTTAVAISVCAYMRWLNNGLEIHAFAIKMGFIDDGVLVGNSLIDFYSKCEKLEAAQEVFDI MLEKDDYTWNSMIGGYIEAGYYRKAYELFAKMQKSDIQPTVVTWNTLISGFMQNGDDEEAIDMFYRMEKDAKTTPDTASWNALIAGYSKTGQQEKAVRVF RQMLSSGFSPNIVSILSVLPAVANLITLRKVKELHGFLLRRNLEASISISNSLIDSYAKSGKLGYSRTLFGQMNYKDSITWDSMIAAYVAHGFSDAALKL GDEMLAQGLPPNKGTFVNIIRAHSLNGCVDEGKHALTRMMEEYQLTPGTENYSAIVDLYGRVGRLEEAIRFIEAMPIKADSSVWCKLFTACRVHGCLDLA IHAGENILGLDPGNSLVRHLLLQTYTLRGKPEDVLRVKWIQDSHQPPKLIGESWVEIENTVHSFASGDQSKPYSSRLVSWIDCISKEIKEKDFQGLWISD DENEDVIGLHSEKLALAFTFVCSAVTPQTVRILKNTRICGDCHRMAKYISLKYGCEIYVSDTKCIHYFKGGHCSCGDYW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	2.2	0.9577
AT1G24610			Rubisco methyltransferase fami...		Lus10034599 [exp]	2.4	0.9371
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	3.2	0.9374
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	4.6	0.9205
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	4.7	0.9458
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	6.3	0.9352
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	6.6	0.9382
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	7.3	0.9432
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	7.5	0.9370
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	8.5	0.9344

Compare expression of checked genes

Lus10001230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.