Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56950 196 / 5e-60 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT2G19480 188 / 5e-57 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT4G26110 186 / 4e-56 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 177 / 2e-53 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 57 / 2e-09 NRP2 NAP1-related protein 2 (.1) AT1G74560 50 / 9e-07 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026197 [exp] 347 / 1e-119 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011957 [exp] 200 / 8e-62 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011956 [exp] 199 / 3e-61 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 186 / 3e-56 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001235 [exp] 182 / 2e-55 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10015612 [exp] 188 / 2e-54 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10042106 [exp] 171 / 7e-51 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10027615 [exp] 160 / 7e-47 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011959 [exp] 160 / 3e-45 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148600 [exp] 192 / 1e-58 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 189 / 2e-57 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 171 / 8e-48 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 160 / 2e-46 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 158 / 2e-44 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 156 / 8e-44 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 153 / 2e-42 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.015G062700 [exp] 47 / 8e-06 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.017G080700 [exp] 45 / 2e-05 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 43 / 0.0002 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10001231 pacid=23166290 polypeptide=Lus10001231 locus=Lus10001231.g ID=Lus10001231.BGIv1.0 annot-version=v1.0 ATGGCCGAAAAACCTGCAAGTAACGACTGTAAGAACAATAAGCTTCTGAATTTGGACGACGTAGACCCCAAGGTGCGCAGCAGCGTGGAAAACCTCCTGG AGATCCAGAGGAAACACGAAAAACTCGATGCTAAATTCCGCGAAGAGAAAGCAGCACTCTTAGCGCAACACCGAAGCCTAATCGAACCGCTCTATTCCCA GCGCTACCGAATCGTGCATTACGAAGGCGTTCCGGAGTTCTGGCTCAACGCCATGAAGAACAATGCAGTATTGTCGGAAGAGATCACCGATAGGGACGAA GAAGCTCTGATTTCGTTGAAAGAGATCAAATGCACCCGAGTTTCGGGAGAACACGACGAGGGATTTAAGCTCGAATTCTTCTTCTACTCCAACTCTTACT TCGAAAACTCAGTCCTGACCAAGACGTACCACTTGACTTGCGAACACGACAACTATGAGGGCCCGGTTCTCGAGAGTGCCGTTGGGACCGAGATCAAGTG GTGTCAGGGGAAGTGTTTGACTCAGAGGATGAGGATGGTGAGGAGGAACGGTAAGGAGGCTGTGAGCAAGACCGAGGATTGCGATAGCTTCTTTAACTTC TTCAAAACTCTGCAAGTTCCGAAGGATGGTGATGAGGAGCTGGATGAAGACGAAGCCGGAGAGGTTCAGAAGAAGTTGGAACAAGACTACAACATGGCTG CTACTATTCGGGACAAGATCGTACCTCATGCCTTGTCTTGGTTCACCGGGGAGGCTGCTATCCGGGCCCGCACTGATTGGCCTGAAGATGATTACAAGGA TGAAGATGCCAACGAGGTGGAGGAAGAGGAGGAGGAGGAGGGTAGTGATAGTGATGCTGATGAAGTTGTGAAGAATATGGAGTCAGATGACGAAGGTAGA CAGTTACAGCAGTGTGAGCGGCCTCCAGAGTGCATTCAGCAGTGA
AA sequence Show only first row Show all	>Lus10001231 pacid=23166290 polypeptide=Lus10001231 locus=Lus10001231.g ID=Lus10001231.BGIv1.0 annot-version=v1.0 MAEKPASNDCKNNKLLNLDDVDPKVRSSVENLLEIQRKHEKLDAKFREEKAALLAQHRSLIEPLYSQRYRIVHYEGVPEFWLNAMKNNAVLSEEITDRDE EALISLKEIKCTRVSGEHDEGFKLEFFFYSNSYFENSVLTKTYHLTCEHDNYEGPVLESAVGTEIKWCQGKCLTQRMRMVRRNGKEAVSKTEDCDSFFNF FKTLQVPKDGDEELDEDEAGEVQKKLEQDYNMAATIRDKIVPHALSWFTGEAAIRARTDWPEDDYKDEDANEVEEEEEEEGSDSDADEVVKNMESDDEGR QLQQCERPPECIQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56950		NFA3, NFA03, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10001231 [exp]	0	1
AT2G40435			unknown protein		Lus10025257 [exp]	6.5	0.7719
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	25.1	0.7266
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	30.0	0.7235
AT1G67590			Remorin family protein (.1.2)		Lus10026481 [exp]	31.2	0.7475
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	36.1	0.7516
					Lus10025229 [exp]	46.3	0.7413
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	57.2	0.7479
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10016200 [exp]	72.8	0.7235
AT1G12340			Cornichon family protein (.1)		Lus10004023 [exp]	78.9	0.7023
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	112.3	0.6528

Compare expression of checked genes

Lus10001231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.