Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48195 642 / 0 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042108 [exp] 1083 / 0 AT3G48195 657 / 0.0 Phox (PX) domain-containing protein (.1) Lus10012042 [exp] 43 / 0.0007 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10027939 [exp] 43 / 0.0009 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082500 [exp] 722 / 0 AT3G48195 728 / 0.0 Phox (PX) domain-containing protein (.1) Potri.015G078300 [exp] 702 / 0 AT3G48195 778 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain
Representative CDS sequence Show only first row Show all	>Lus10001232 pacid=23166294 polypeptide=Lus10001232 locus=Lus10001232.g ID=Lus10001232.BGIv1.0 annot-version=v1.0 ATGGAAGAAATTCTACTTGATTCAAACGAGTCTACAAGGCCAAAGTTCCTCCAGGGTAATCTCAGTTTCCACTCGCAGCCAACTTTGCCTCAAAGAGATG GTGGGAAAACCGCTTCTACTTCTGGATCAGTTGATACCTATGCATTAACCAAACAGTTGAAAAGAATTGATGGAGCTGATGTGGTAGGTGCAAAACAGAA GAGAGGAGATGTCTCCTTGAGTGAAAGATTGGTTGGAGTTAAAGAATACACAGTCTACACTATAAGAGTGTGGAGTGGTACAGATCAATGGGAGGTTGAA CGCAGATATCGAGATTTTCTGAATCTACACCGTCAGCTCAAGTCATTGTCTGCTTATCAAGGGTGGTCTCTTCCTCTGCCCTGGTCGTCCGTAGGAAGGG AGTCCAAAAATTTACTTGGCAGTGCCTCTCCAGATGTTGTATCCAAGAGAAGTGTGCTGATTCAGGAGTGCTTACATTCTATTCTGGTGCCTGGACTCTT TTCCAGCCTTCCTAGTGCGTTATTTTGGTTCTTGTGTCCCCACGACTCGCTACCTAGTTCCCCAGTGTCAGAAACACAATCCGCTGGTTCGAGAAGTTTA GGTACTTTTGGGAAGACAATACGCCTGATTGTTGAAATTCTGCCTCACAAATCTATGAAACAATTGTTAGAAGCACAACATGAGACTTGTGCTGGATGCT ACAAGCATTTTGGTGCTAGTAACACACTTATACATGATTTCGCCAAGACCCTTGGTTGGGGAAAGCCTCGGCTATGCGAATACACTGGTCAATTGTTTTG TTCTTCGTGCCATACAAATGATGGTGCAGTTTTGCCAGCACGCGTACTTCATTATTGGGATTTCACCAAATATCCAGTCTCTCAGATGGCCAAGTCATAC CTGGATTCCATACACGAACAGCCAATGCTCTGTGTTGGCGCAGTTAATCCTTTCCTGTCGTCCAAGGTACCAGTAATGCACCATGTTATGAGTGTCAGGA AGAGAATTGGAAGTATGCTTCCTTATCTTCGCTGCCCATTCCGCAGGACCGTAAACAAAGGACTTGGTTCCCGTAGATATCTTCTTGAAAGCACTGATTT CTTTGCCCTCAAAGACCTCATCGATCTCTCCAAAGGAGCTTTCGCAGATCGTTTTAATGAACTCCACCACGAAACCGTTTTATACCTTGATGCAGCCCTC CCCATAATGGTCGAGACAGTTTCCGCCAAAATTCGGGAGCATATAACAGAGCAATGCCTTGTATGCTGTGACGTTGGAATCCCTTGTGGTGCTCGACAAG CTTGTGATGATACTTCTTCGCTCATTTTCCCTTTCCAGGAATCCGAGATTGAGAGGTGTTCATCCTGTAACTTGGTGATGCATAGATCTTGCTTCAGAAA GCTCCCAACCTGCTCGTGCGGAGCACATCTAGGAGCGACCGACATCGCCACTTCATCGAATCGAGCAACCCAACTTGTCAGCAACGACTCATTAGCAAGA TCAACATCTTTCTCAACAGCTCGATTGCTGTCAGGACTGTTCTCGAAAGGAAAGGAACACAAGACGATCGATCGTAAAAACAGCAGCAATGTCATCCTAA TGGGTTCCTTGCCGACTACAAACACTTTGTAA
AA sequence Show only first row Show all	>Lus10001232 pacid=23166294 polypeptide=Lus10001232 locus=Lus10001232.g ID=Lus10001232.BGIv1.0 annot-version=v1.0 MEEILLDSNESTRPKFLQGNLSFHSQPTLPQRDGGKTASTSGSVDTYALTKQLKRIDGADVVGAKQKRGDVSLSERLVGVKEYTVYTIRVWSGTDQWEVE RRYRDFLNLHRQLKSLSAYQGWSLPLPWSSVGRESKNLLGSASPDVVSKRSVLIQECLHSILVPGLFSSLPSALFWFLCPHDSLPSSPVSETQSAGSRSL GTFGKTIRLIVEILPHKSMKQLLEAQHETCAGCYKHFGASNTLIHDFAKTLGWGKPRLCEYTGQLFCSSCHTNDGAVLPARVLHYWDFTKYPVSQMAKSY LDSIHEQPMLCVGAVNPFLSSKVPVMHHVMSVRKRIGSMLPYLRCPFRRTVNKGLGSRRYLLESTDFFALKDLIDLSKGAFADRFNELHHETVLYLDAAL PIMVETVSAKIREHITEQCLVCCDVGIPCGARQACDDTSSLIFPFQESEIERCSSCNLVMHRSCFRKLPTCSCGAHLGATDIATSSNRATQLVSNDSLAR STSFSTARLLSGLFSKGKEHKTIDRKNSSNVILMGSLPTTNTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	3.7	0.9081
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	4.0	0.8985
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	6.3	0.8742
AT4G10930			unknown protein		Lus10023068 [exp]	6.6	0.8828
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	7.1	0.8827
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	9.6	0.8929
AT2G42490			Copper amine oxidase family pr...		Lus10026696 [exp]	9.8	0.8383
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	11.2	0.8302
AT3G49490			unknown protein		Lus10015581 [exp]	11.3	0.8627
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	13.7	0.8590

Compare expression of checked genes

Lus10001232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.