Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48195 76 / 2e-14 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042108 [exp] 715 / 0 AT3G48195 657 / 0.0 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078300 [exp] 182 / 5e-50 AT3G48195 778 / 0.0 Phox (PX) domain-containing protein (.1) Potri.012G082500 [exp] 171 / 3e-46 AT3G48195 728 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001233 pacid=23166307 polypeptide=Lus10001233 locus=Lus10001233.g ID=Lus10001233.BGIv1.0 annot-version=v1.0 ATGATTAATGGCGAGAGTGTCCCCCTTGCTACGAGTACTGATCGTGATCCTTGCGGTTTATCCGCATCGAAATCAGAAGGGGGTGATGGATCGCAGGGTT CGTTGTCGGATTACTCTTCGTGTGGGGAATCGGAGTTTGATCGTTACTGTAGCGCAAACTCGGTGATGGGGACACCCAGCGTTTGTAGCGCGTTTGGACC AGCTGGTGAGTTTCTGGATTCTGAGTTTGGTTCTTCGAGGAGTTTTGAGGATTTTAGTTTGGGAGGGAGGATCGATAGAGATGTGGAAGGGCGAAAGCTG ACTAAGCTTTCAAATTCAGGTGTAGATTGTTTGAACAGGGAAGTTGATGGGGTAGATAACAGTAGAGTGAGTTCTCGGGATGCTGGAAGGATCGTTGGAG AGAGTAGTGGAATGGCTGGTAAATTGGATGGTTGGCTAGATGCTGTTCAAGTGGGAAACGTGAAAGGTAGTAATGATGGGCTTGAAGCGATGTCTTTGGA AAAAGGGATTGTTGAAGAAAATGAGGGTTTTTCAAGTAAGTTGGACTCGCAAATGCTTTCGCAGCTTAACGCGGCAAAAGTAGGGTTAGAGGTAGATGAA GATGAGCTCTCATGTAGAAATGGGAATTCCGAGGATGACGATGATGATTCAATGTATGGCTGTGGTTCAGATGATGAAAACAGGAAGAATTTGTATATCC AGGGAAAGATAGAGTACAGCAAGAATGTAACACTTGAGAACAACAGTCCGTTACTCATCAATTCACCTGTTGCTTTTGGTTCTAGTGATTTTGATGATTT TGAGCAAGAAACTATTGGAAGCAATCTAGCTTCTCTTACCTTGGGTGAGTTTCAGGAATTAGGAACTCAAAGATCGGTTTTCAGCTCTCTGCCCATGACT GGGGAGCCAGTTGCTTCTGGTGGTTGTTCTTTAGTTCCTACATGTTCTCATGATTTGGAACTGGATCAGTTGGAAGGAGTGAGAGATATTCCTGTCGCCA TCTGCCAGCTCAGAGAAGCTGATGGATTGTCCAAGGTTCATAGAAGTACATCATCGCTTGGGTCTGATCTTTCAAGCCTTTGTGGACTGGACCAAGAAGA TGCGACTGACAATTCTCTTTCTTATAACAACGATGGTTCTAAAGTTACAATGGCGCTTTTTAAGAACAGTTCCATCAGTGATATACTTGATTTGGAGCTA GATCCGCTGGGCAGAAGGAGATCACGAATGGGCCCCTGCACAGTCAGCGCTTCAAGATGA
AA sequence Show only first row Show all	>Lus10001233 pacid=23166307 polypeptide=Lus10001233 locus=Lus10001233.g ID=Lus10001233.BGIv1.0 annot-version=v1.0 MINGESVPLATSTDRDPCGLSASKSEGGDGSQGSLSDYSSCGESEFDRYCSANSVMGTPSVCSAFGPAGEFLDSEFGSSRSFEDFSLGGRIDRDVEGRKL TKLSNSGVDCLNREVDGVDNSRVSSRDAGRIVGESSGMAGKLDGWLDAVQVGNVKGSNDGLEAMSLEKGIVEENEGFSSKLDSQMLSQLNAAKVGLEVDE DELSCRNGNSEDDDDDSMYGCGSDDENRKNLYIQGKIEYSKNVTLENNSPLLINSPVAFGSSDFDDFEQETIGSNLASLTLGEFQELGTQRSVFSSLPMT GEPVASGGCSLVPTCSHDLELDQLEGVRDIPVAICQLREADGLSKVHRSTSSLGSDLSSLCGLDQEDATDNSLSYNNDGSKVTMALFKNSSISDILDLEL DPLGRRRSRMGPCTVSASR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	0	1
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	2.4	0.8871
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	3.5	0.8940
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	4.9	0.8729
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	6.2	0.8390
					Lus10029801 [exp]	6.9	0.8455
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	7.7	0.8445
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	9.5	0.8085
					Lus10031222 [exp]	13.6	0.7685
AT5G19400		SMG7	Telomerase activating protein ...		Lus10036041 [exp]	16.0	0.8582
AT3G56840			FAD-dependent oxidoreductase f...		Lus10020854 [exp]	16.4	0.8160

Compare expression of checked genes

Lus10001233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.