Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66540 301 / 1e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042107 [exp] 493 / 7e-170 AT5G66540 400 / 6e-133 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082600 [exp] 358 / 9e-119 AT5G66540 342 / 8e-112 unknown protein Potri.015G078500 [exp] 355 / 2e-117 AT5G66540 360 / 8e-119 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04006 [flax] [poplar] Mpp10 Mpp10 protein
Representative CDS sequence Show only first row Show all	>Lus10001234 pacid=23166300 polypeptide=Lus10001234 locus=Lus10001234.g ID=Lus10001234.BGIv1.0 annot-version=v1.0 ATGGAGGAAAAGAAAACGGAGCAGCTTGCTGAGGATGACGATGAGGATGGTGATATGGATGTTGATGATGAGCATGAGGATGAGGATGGTGATATGGATG TTGATGATGATGAGGAGGATGAGGATGAGGAGGGGAGTGAAGAAGAGGAGGAGAAAATTGGAGGGATAGAAGATACGTCTTTCAAGATAAACGAGTTGAA GGAGTATTTGGAAGAGGAAGAAGCTAAGCATTATGGGCTCGATCCAAAGAAGAAGAAGTCTAAGGGAAGTCAAGGCAAGAAATTGAAGGGTGAAGATGAT GACAGTGAAGATGATGAAGAAGAAGATGAGGATGATGAGCTCGATTTCTTTGGTGAAGGTGATGACGACGTTGAAGAAGATGATATGGCAAACGCCAGAG CTGAAGACTTCTTTGCCCCTCAGAAAGGAGTCCCGAAGAAGTCCAAGTTTAGGATGGAAGACACAAGCTCAGAAGAAGAAGAAGAGGAGCAACAACAACA ACAACAACAACAAGGTTCAAGCTCTGATGATGAGGAAGACAATGAGAAACCAGACCAGAAACCAAAAGTACTTTCCACCCATGAAAAGGAACTCCAGAAG AAACAAGCTGAGATAGAGAAAATGGAGAAAGCAAATCTGGATCCGAAACCCTGGACCCTGCAGGGAGAGGTTAAAGCTACAGACAGACCCAAGAACAGTG CATTAGAAGTTGATTTAGATTTTGAGCATAATGTTGGGCCTGTCCCAGTAATCACTGAGGAGGTTACACAATCTCTAGAGGAGATGATTAAGAAAAGGAT CCTTGAGGGACAATTCAATGACCGTAAAAAGGCTCCTGGTTTGCCCTCTAAAGCACCAAGAGAGTTGAAACAGATGGATGAAAATAAGAGCAGCAAGGGC CTTGCCGAAGTTTATGAGAACGAATATGTTCAGCAGACAAATCCAGCTGCTGCTCCATTATCTTTCTCAGATGAACAGAAGACGGAGGCAAGCACCTTGT TCAAGAAACTTCGCTTGAAGTTAGATGCACTCTCCCACTTCCACTTTGCTCCAAAACCTGTGATCGAGGATATGACGATCCAATCAAACGTCCCTGCTCT TGCAATGGAAGAGATTGCTCCTCTCGCAGTTTCAGATGCTGCTATGCTTGCTCCTGAAGAAGTTTTTGAAGGCAAAGGGAATGTTAAAGCAGAAGTGGAA CTTACTCAAGAAGAAAGGAAGAGAAGAAGGGCTACAAAGAAACGAAAACACAAAGCTAAAATGGCCAGAAAGGCGGAAAGTATAAAGGCACGAGAAGATG AGTTGCAAAACCAGAAAGCTGGTAAACCTCATTTGAGACCGAGTTTGCTGAAGAAAACTAGCTTCCTTAACCGATACATGGACCTCGATCCAGCTTGA
AA sequence Show only first row Show all	>Lus10001234 pacid=23166300 polypeptide=Lus10001234 locus=Lus10001234.g ID=Lus10001234.BGIv1.0 annot-version=v1.0 MEEKKTEQLAEDDDEDGDMDVDDEHEDEDGDMDVDDDEEDEDEEGSEEEEEKIGGIEDTSFKINELKEYLEEEEAKHYGLDPKKKKSKGSQGKKLKGEDD DSEDDEEEDEDDELDFFGEGDDDVEEDDMANARAEDFFAPQKGVPKKSKFRMEDTSSEEEEEEQQQQQQQQGSSSDDEEDNEKPDQKPKVLSTHEKELQK KQAEIEKMEKANLDPKPWTLQGEVKATDRPKNSALEVDLDFEHNVGPVPVITEEVTQSLEEMIKKRILEGQFNDRKKAPGLPSKAPRELKQMDENKSSKG LAEVYENEYVQQTNPAAAPLSFSDEQKTEASTLFKKLRLKLDALSHFHFAPKPVIEDMTIQSNVPALAMEEIAPLAVSDAAMLAPEEVFEGKGNVKAEVE LTQEERKRRRATKKRKHKAKMARKAESIKAREDELQNQKAGKPHLRPSLLKKTSFLNRYMDLDPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66540			unknown protein		Lus10001234 [exp]	0	1
AT5G19300			unknown protein		Lus10034063 [exp]	4.9	0.9061
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	14.1	0.9006
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	19.1	0.8851
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	19.9	0.8921
AT5G09770			Ribosomal protein L17 family p...		Lus10035729 [exp]	20.8	0.8701
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	21.5	0.8948
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	22.1	0.8937
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	25.7	0.8654
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	27.1	0.8776
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	27.7	0.8781

Compare expression of checked genes

Lus10001234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.