Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26110 250 / 2e-81 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 248 / 3e-80 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT2G19480 246 / 2e-79 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT3G13782 208 / 2e-65 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 69 / 2e-13 NRP2 NAP1-related protein 2 (.1) AT1G74560 64 / 1e-11 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042106 [exp] 514 / 0 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042097 [exp] 340 / 4e-115 AT4G26110 232 / 5e-72 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011956 [exp] 244 / 4e-79 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 242 / 4e-78 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 236 / 7e-76 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 226 / 5e-69 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10001231 [exp] 213 / 3e-67 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) Lus10027615 [exp] 212 / 6e-67 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10026197 [exp] 206 / 2e-64 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148600 [exp] 253 / 2e-82 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 252 / 6e-82 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 223 / 2e-70 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 203 / 1e-61 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 206 / 2e-60 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 196 / 1e-58 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 185 / 9e-55 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.015G062700 [exp] 60 / 4e-10 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.017G080700 [exp] 58 / 1e-09 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10001235 pacid=23166304 polypeptide=Lus10001235 locus=Lus10001235.g ID=Lus10001235.BGIv1.0 annot-version=v1.0 ATGGCCGCCGAAGGAGCTCTTAACGAGGATGCTGTCGTCAATCAACTCTCGGAACTCGCGCTGAAGCGTCTGGAGGGCTTAGATCCCCAAGTGCGTGACC GGATGAAGCGTCTGATGAAGATTCAGACTCGTCACGACGAGTTCGAAGCCAAACTTTTCGAGAAGATGACCGCCCTCGAATTCAAGTACCAAAACTTGTA CGAGCCGCTTTACTCCCGACGCTACGGCATTGTAAACGGTACCGCAGAGGCATCATCAGCAGGAGTTCCAAAGTTCTGGCTGCTCGCGATGAAGAACAAC GACATCGTATCGAACGAGATAACATCGAGGGACGAAGGAGCTCTGATGTTTTTGAAGGAGGTTAAGTGGAGCAGACTACTTGACGAGGAGAATCAGCCTC ATTCCAACAAGGGATTCAGGCTGGTTTTTTACTTCGACCCGGAAAACAACCCTTATTTCGAAAACTGTGTCCTGACCAAGACGTACCACATGGCTTTTGA GGCGTCGGATTATAGCGAGCCGCTTGTTGAGAAAGCTGTTGGGACGGAGATCAAGTGGCGTGAAGGGAAGGATTTGACTAAGAAGAAAGGTGAAGTTGTT GAGGACTGTGAGAGCTTCTTTAACTTCTTCAACCCTCCGAGAATCCCTGTGCATTATGAGGAATTGGATGAAGACGGTGCTTATGATCTTCAAAGTAAGA TGGAACTAGACTTTGATTTGGGGTGTACTATTCGGGACAAGATCGTGCCACGTGCTGTGTCCTGGTTCACCGGGGAGGCTGCTGTTTGGGGCGAGGACGA GGAGAACGATGATGATCACGAGGACGGCGAAAATGATGATGATCATGAGAACAGTGATAAGGATAGTGAAGATGAAGGGACTGTAAAAGAGTTGACTGAG AGTAAGATAGAAGATTAG
AA sequence Show only first row Show all	>Lus10001235 pacid=23166304 polypeptide=Lus10001235 locus=Lus10001235.g ID=Lus10001235.BGIv1.0 annot-version=v1.0 MAAEGALNEDAVVNQLSELALKRLEGLDPQVRDRMKRLMKIQTRHDEFEAKLFEKMTALEFKYQNLYEPLYSRRYGIVNGTAEASSAGVPKFWLLAMKNN DIVSNEITSRDEGALMFLKEVKWSRLLDEENQPHSNKGFRLVFYFDPENNPYFENCVLTKTYHMAFEASDYSEPLVEKAVGTEIKWREGKDLTKKKGEVV EDCESFFNFFNPPRIPVHYEELDEDGAYDLQSKMELDFDLGCTIRDKIVPRAVSWFTGEAAVWGEDEENDDDHEDGENDDDHENSDKDSEDEGTVKELTE SKIED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10001235 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	4.9	0.8237
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	7.5	0.7955
					Lus10003631 [exp]	9.3	0.7663
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	14.6	0.7650
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	16.5	0.7470
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	19.0	0.7483
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10009250 [exp]	22.5	0.7130
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015613 [exp]	22.8	0.7288
					Lus10016909 [exp]	23.2	0.7540
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	25.3	0.7368

Compare expression of checked genes

Lus10001235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.