Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23380 211 / 2e-65 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 206 / 5e-64 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT4G08150 184 / 2e-54 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 167 / 2e-48 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT1G62990 100 / 1e-23 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G25220 84 / 9e-18 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT4G32040 82 / 4e-17 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT5G11060 80 / 2e-16 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT5G02030 62 / 3e-10 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27220 61 / 4e-10 HD BLH5 BEL1-like homeodomain 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042103 [exp] 241 / 7e-80 AT1G70510 125 / 1e-35 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) Lus10013037 [exp] 210 / 4e-65 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 208 / 2e-64 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10042102 [exp] 180 / 1e-55 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 170 / 5e-49 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 157 / 5e-45 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10007245 [exp] 115 / 8e-31 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10024485 [exp] 93 / 2e-21 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001941 [exp] 86 / 2e-18 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079100 [exp] 233 / 6e-74 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 230 / 8e-73 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 210 / 2e-65 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 204 / 3e-63 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 195 / 1e-59 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 194 / 3e-59 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.002G113300 [exp] 184 / 7e-55 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.011G011101 [exp] 174 / 9e-51 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 174 / 9e-51 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 170 / 2e-49 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain CL0123 [flax] [poplar] PF03791 [flax] [poplar] KNOX2 KNOX2 domain
Representative CDS sequence Show only first row Show all	>Lus10001238 pacid=23166289 polypeptide=Lus10001238 locus=Lus10001238.g ID=Lus10001238.BGIv1.0 annot-version=v1.0 ATGGACACTCCGTACTATCCCTACTCAACTCCTACTATCATCCCCGGATTCACCAGCAACAACTTGCATCACGATTATTACGTTGATCATGATAATTACT GCTACAATTACTATTACGCACAATCGTTCCCTCACTCCCCCCCTCCCGCCCCCACCCCCCCCCCCGCCGCCGCCGGCGAAGTCATGTTCTGTCCGTCGTC GGGAGGGTCGTCTTCTGTATCCGATGCTGCCTCCACGGCGCAGCTGCCTCCGCAAGAAGACCAGACTGAAAGTGAGATTAGAGCGAAGATTTCAGCTCAT CCTCTTTACCCTAGGCTGATTCAGGCTTATGTCGATTGCCAGAAGGTTTTGGTTTGGTTGAGTAAGGTTGGAGCTCCGGCTGAGATGGCGTTTCTACTGG AAGAGATCAGACAACAAAGCCATCATCTATCCTCCTACCACACTTCCAGTGTGGATCCGGAGCTTGACGATTTCATGGAGAGATACCACGAGATATTGGT GAAGTACAAATGGGAATTGTGGAAGCCGTTTGAGGAAGCCACCACCTTCTTGAGTGATATTCAATCTCAATTCCATACCCTCTGCGGCGCTGATGCTCCA CCTTCCATACACGTTTCAGATCATGAGGTTGCAGAAGGAGGAATGATGTACACTAATGGTTACAACAGTAACGCTGGTGGAGGTGGTTCTTCCGACGAAG ACATCATAATGGCAGGCGGATCAGAAGTGGTCGATGGCCACTGCAGCCAGCAGTTGAACGAAGAAGAGCGAGAGCTGAAAGACAAGCTGTTAGAGAAGTA TGGCGGGTACCTGAGCAGGCTAAAACAGGAGTTCACCAAGAAGAAAAAGAAAGGGAAGCTCCCAAAGGAAGCCCGCCTCCTCCTCCTCAACTGGTGGAAC CTCCACTACAAGTGGCCTTACCCCACGGAAACGGACAAGTTGGAGCTGGCGGCGTCGACGGGACTGGACCAGAAGCAGATAAACAACTGGTTCATTAACC AGAGGAAGCGGCACTGGAAGCCCACTGAGAACATGCACTCATCTGTCATGGATACCCTCTACGGCTCCTCCGTATCTAATCAATACTACCCATCTTCTCA TTATCAGCAGCATTAA
AA sequence Show only first row Show all	>Lus10001238 pacid=23166289 polypeptide=Lus10001238 locus=Lus10001238.g ID=Lus10001238.BGIv1.0 annot-version=v1.0 MDTPYYPYSTPTIIPGFTSNNLHHDYYVDHDNYCYNYYYAQSFPHSPPPAPTPPPAAAGEVMFCPSSGGSSSVSDAASTAQLPPQEDQTESEIRAKISAH PLYPRLIQAYVDCQKVLVWLSKVGAPAEMAFLLEEIRQQSHHLSSYHTSSVDPELDDFMERYHEILVKYKWELWKPFEEATTFLSDIQSQFHTLCGADAP PSIHVSDHEVAEGGMMYTNGYNSNAGGGGSSDEDIIMAGGSEVVDGHCSQQLNEEERELKDKLLEKYGGYLSRLKQEFTKKKKKGKLPKEARLLLLNWWN LHYKWPYPTETDKLELAASTGLDQKQINNWFINQRKRHWKPTENMHSSVMDTLYGSSVSNQYYPSSHYQQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10001238 [exp]	0	1
					Lus10041871 [exp]	7.1	0.9596
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	9.5	0.9593
AT5G01660			unknown protein		Lus10018307 [exp]	11.9	0.9556
					Lus10002045 [exp]	14.3	0.9513
AT1G70510	HD	ATK1, KNAT2	ARABIDOPSIS THALIANA KN 1, KNO...		Lus10042103 [exp]	18.3	0.9124
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	18.8	0.9507
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	27.0	0.9444
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10012338 [exp]	27.1	0.9248
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	28.6	0.9489
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10042102 [exp]	29.0	0.9308

Compare expression of checked genes

Lus10001238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.