Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 550 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 533 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042101 [exp] 969 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10037653 [exp] 552 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10015635 [exp] 550 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012083 [exp] 394 / 3e-132 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 291 / 1e-92 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079300 [exp] 683 / 0 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.006G231000 [exp] 552 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 548 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 543 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.001G197300 [exp] 539 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001239 pacid=23166298 polypeptide=Lus10001239 locus=Lus10001239.g ID=Lus10001239.BGIv1.0 annot-version=v1.0 ATGGGTTCCAGCTCACCGGACTCTTCATCTCCTCCTCCTCTTCAGTGGAAGTTCTCTCAGGTCTTCGGCGAGAAAGTCCCCGGCGAAGACGTTCAGAACG CTGACCTTATCTCTGCGATCGAGTTCGATAAGAGCGGCCGTCATCTTGCTGTTGGAGATCGAGGTGGCCGTGTTATAATCTTCGAGGGCAAGGACGACCA ATCAGATGAATATCTTTCACGAAATGAGTTGGAGGCTGCGGATTTTGGTAATAAGGAACTTCATCGTCCTATCTATCACTACAAAGCTGAATTTCAGAGT CATGAACCGGAGTTTGACTACTTAAAAAGCTTGGAGATTGAAGAGAAGATCAATAGAGTGAGATGGTGTATGATGCGTGATGGATTGATGTTCCTGCTTT CAACAAATGATAAAACAATTAAGCTTTGGAAGGTCAAGGAACATAAGGTGAAGAAAGTGAAAGAAATGGATCACAGTTCAGCTGTGCATTCAGAAAATGC TCTATTAGCCAATGGAAGTTTCGTAAGCTTGCGAGAAAAGCCATCCCATGTTAATGGCTATCATCAGGATTCGATGGAGCAAACAGTTAAGAACATTCCT CCAGTTCAACAGTTGCAAGGCAAGATATCTTCTTCTGAAGACTCTGTCCGTGCAAGTTGTCGAAAAGTTTATGCTCATGCACATGATTTCAATGTCAATT CAGTGTCTACCAACAGTGATGGTGAGACATTTATTTCTGCAGATGACCTTAGAATAAATTTATGGAACCTTGATGTCAGAGATCAATGTTTCAATATCAT TGATATAAAGCCTTCAAATATGGAAGATCTTACTGAGGTGATAACGTCAGCTGAGTTCCATCCGATTCATTGTAACCTTCTAGCATACAGCAGTTCGAGA GGTTTCATTCGTCTAGTTGATATGCGACAGTCTGCATTATGTGATAAAAGTGCAAGAATTTTACAGGATGAGAGTCACCTTGGGTCTAAATCATTCTTTA CAGAGATCATAGCCTCTGTTTCAGATATAAAATTCACAAATGATGGACAGCACATCCTAAGTCGGGATTTTATGAATTTAAAGCTCTGGGACATAAGAAA GGACTCTACGCCGGTGAAGGTATTAAAGATCCATGAGCACTTGCGCCCTAAGTTGTGTGAACTGTACAATGATGACTCCATATTCGACAAATTCGAATGC TGCGTCAATGGAGATGGATCACAATTTGCGACTGGTTCTTACAGCAACCTCTTACACATATTCTCACATGGTGGTGATTCAACGGAAGAGCACATGACGA TCGAGGCTGGCAAAAATCCTAGCAGGAACAGGAAGCCAACTAATCACTCTGCACCGAGGGCAAGGAGGTCATCCTTGAGCAATCTAACGCGTGGATTCTA CCGGCAAGGGCATGGGAATTCAAACAGTCATGAGCTTGGGTATGATGTAGGATCCAAGTTGCTTCATATGGCGTGGAACCCAGCCAGTAACTTGATTGCA TGTTCAGCTGGAAGCAGCTTGTTCATGTATCATGCTTGA
AA sequence Show only first row Show all	>Lus10001239 pacid=23166298 polypeptide=Lus10001239 locus=Lus10001239.g ID=Lus10001239.BGIv1.0 annot-version=v1.0 MGSSSPDSSSPPPLQWKFSQVFGEKVPGEDVQNADLISAIEFDKSGRHLAVGDRGGRVIIFEGKDDQSDEYLSRNELEAADFGNKELHRPIYHYKAEFQS HEPEFDYLKSLEIEEKINRVRWCMMRDGLMFLLSTNDKTIKLWKVKEHKVKKVKEMDHSSAVHSENALLANGSFVSLREKPSHVNGYHQDSMEQTVKNIP PVQQLQGKISSSEDSVRASCRKVYAHAHDFNVNSVSTNSDGETFISADDLRINLWNLDVRDQCFNIIDIKPSNMEDLTEVITSAEFHPIHCNLLAYSSSR GFIRLVDMRQSALCDKSARILQDESHLGSKSFFTEIIASVSDIKFTNDGQHILSRDFMNLKLWDIRKDSTPVKVLKIHEHLRPKLCELYNDDSIFDKFEC CVNGDGSQFATGSYSNLLHIFSHGGDSTEEHMTIEAGKNPSRNRKPTNHSAPRARRSSLSNLTRGFYRQGHGNSNSHELGYDVGSKLLHMAWNPASNLIA CSAGSSLFMYHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	1.4	0.9394
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	2.4	0.9284
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	3.7	0.9153
AT3G14460			LRR and NB-ARC domains-contain...		Lus10007261 [exp]	6.0	0.9231
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	6.9	0.9147
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	8.5	0.9214
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	9.6	0.9266
AT2G39950			unknown protein		Lus10040223 [exp]	14.7	0.9137
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	14.8	0.9097
AT3G52905			Polynucleotidyl transferase, r...		Lus10008532 [exp]	16.4	0.8742

Compare expression of checked genes

Lus10001239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.