Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19100 532 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36280 382 / 6e-126 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36290 365 / 3e-119 CRT1 compromised recognition of TCV 1 (.1) AT5G50780 332 / 2e-104 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G24970 319 / 1e-100 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 315 / 4e-99 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36270 255 / 2e-78 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042100 [exp] 964 / 0 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10039959 [exp] 620 / 0 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 353 / 8e-115 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10041578 [exp] 311 / 1e-97 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 305 / 8e-95 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 298 / 5e-92 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 222 / 5e-66 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089000 [exp] 629 / 0 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 596 / 0 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 362 / 1e-117 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.015G100900 [exp] 333 / 1e-104 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 330 / 9e-104 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 314 / 9e-98 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 56 / 8e-08 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10001240 pacid=23166301 polypeptide=Lus10001240 locus=Lus10001240.g ID=Lus10001240.BGIv1.0 annot-version=v1.0 ATGGTTAGCATGCAAGCTGTTAAACTGGAACCAGATCTTGTGATTGTTGAATCTCAAGGAAAAGATAAGTACACTACCCAATCTAGCAGACAAGAGTGTG AGGAGAATAGAAGCCCAAATACCTTAACCACTGGCCAAACTGGCTCTAGTGTGTTAGAGCAGGTTCAGTCTCCTGTAGATGATACTGGCGTTTCTCCAGC CTCAACCTTGCCTTCAGCACCGCTTTGTCGACAGTTTTGGAAGGCTGGGAGCTATACTAATGCACATGGCTCCAAGGTCAATCTTCAAAGTGGAAAAACC TACCTCCATGTTCACCCCATGTTTCTTCATTCAAATGCCACTTCGCATAAATGGGCATTTGGTGGTATGTGCGGATACTGGAATATTTTAGTTAGTTTCT TTCATCTCGCAGCATGTTCATTTGTCTGTATCTTATTTCTCTTTCGACCACTTTCAGCAATTGCAGAATTGCTTGACAATGCCATTGATGAGATACAAAA TGGCGCCAGTTTTGTCACTGTAGATAAAATCTCAAGTCCGAGAGATGGGCTTCCCGCATTGCTTATTCAAGATGATGGCGGGGGAATGAACCTTGAAGCC ATGCGGCGATGTATGAGTTTTGGTTTCTCTGATAAGAAATCTGCTGGATCTATTGGACAGTATGGTAATGGCTTCAAAACCAGCACCATGAGGCTTGGAG CTGATGTGGATTATGAGTTTAATAAAGAAAATAACAAGTTCGAAGTTTCACGACGGCAGACCAAGGAGTCTTTCAAAGCAAATCTTTCTCTACTCGTGCG ATGGTCTCCGTATTCTACGGAAGCAGAGCTTTTGAAGCAGTTTGATGATATTGGATTGCACGGGACAAAAGTTATGATTTATAACCTGTGGTGCAATGAT GACGGGAATACGGAGTTGGACTTTGATACAGATCGTCAGGACATTCGTATAGAAGGTGCTATGAGAAAGAATGAATCTCTTCCTGCTTGGAGGACAGTAA ATGAACAGCACATCAGCAATCGGTTACATTACTCTCTCCATATTCCTGACAATTTCAGTATAATGTTGCGTGGACAAGTTGTTAGGCCCCTTAATCTTGC TGATGACCTCAAATATCAACAATATATTATCTACAGGCCTCATTGTGGTGGATCAAAGGAGAGCGTAATCCCTGTATTCCTATCGTTCTTTGATTCAATT TTGCAGAATCATGTGATCACTACGATCGGTTTTCTAAACGATGCTCCACGTATCGCTATCCATGGCTTCAATATTTATCACAAGAATCGTCTAATTCAGC CTTTTATGCAAGTTGTAAGGTATGCTGACAGTAGGGGCAGAGGAGTGGTAGGTATTCTAGAAGCAAACTTTATCAAGCCAACTCATAACAAACAGGACTT CGAGAGAACTTCCCTTTTCCAGAAACTTGAAGTTCGGCTGAAGGAGATGACATTTGAATATTGGGACATTCATTGTGGACTGATTGGATACCAGGTCAAA AAGAAGGTTAGGGCAGTGAACTCTCCAGATGTGCCTCCTGTCACGGCACATACTCGCCATGAAAATCCTGTAATCCTGAATCGAACCTTCCCAACTGTTG GTACAGCAAATGAAACTTTTCCTGGTAAATGCTCGACGAAGTTGTGA
AA sequence Show only first row Show all	>Lus10001240 pacid=23166301 polypeptide=Lus10001240 locus=Lus10001240.g ID=Lus10001240.BGIv1.0 annot-version=v1.0 MVSMQAVKLEPDLVIVESQGKDKYTTQSSRQECEENRSPNTLTTGQTGSSVLEQVQSPVDDTGVSPASTLPSAPLCRQFWKAGSYTNAHGSKVNLQSGKT YLHVHPMFLHSNATSHKWAFGGMCGYWNILVSFFHLAACSFVCILFLFRPLSAIAELLDNAIDEIQNGASFVTVDKISSPRDGLPALLIQDDGGGMNLEA MRRCMSFGFSDKKSAGSIGQYGNGFKTSTMRLGADVDYEFNKENNKFEVSRRQTKESFKANLSLLVRWSPYSTEAELLKQFDDIGLHGTKVMIYNLWCND DGNTELDFDTDRQDIRIEGAMRKNESLPAWRTVNEQHISNRLHYSLHIPDNFSIMLRGQVVRPLNLADDLKYQQYIIYRPHCGGSKESVIPVFLSFFDSI LQNHVITTIGFLNDAPRIAIHGFNIYHKNRLIQPFMQVVRYADSRGRGVVGILEANFIKPTHNKQDFERTSLFQKLEVRLKEMTFEYWDIHCGLIGYQVK KKVRAVNSPDVPPVTAHTRHENPVILNRTFPTVGTANETFPGKCSTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	0	1
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	1.7	0.8134
AT3G51980			ARM repeat superfamily protein...		Lus10038535 [exp]	4.0	0.8034
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	10.1	0.8265
AT4G39380			unknown protein		Lus10020841 [exp]	10.2	0.7803
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	13.9	0.8165
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10012051 [exp]	20.3	0.7303
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	22.4	0.7849
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	31.3	0.7292
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	34.6	0.7589
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	39.6	0.7548

Compare expression of checked genes

Lus10001240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.