Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042098 [exp] 185 / 2e-62 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001241 pacid=23166305 polypeptide=Lus10001241 locus=Lus10001241.g ID=Lus10001241.BGIv1.0 annot-version=v1.0 ATGGCAAAGGTAGTTCAAGGTCTGAAATCCGGCTTCTTCAACATCGTCGGAGCTCTCAAGTGCGGCGGCCGACCAACCACCGTCGACGAACCAGTTCCCC TCTCCCCGACTCCCGCAACCGCCGCCGGGAAGAGCGATGAAATAGTTTATGCGGGTGAAGCTAAGAAACAAGAAGTCGTCCACATAGGAGAAGCTCGTGA AGATCTATACGTGGAAGCTTCCGAGTTCAAATCCGTGCAGGTGTTGAAAATGGTCCGATCCAGAGAACCAGGAGGAGCACCCAAAGGTTCTCGTCCAAGA ACTGGCTGA
AA sequence Show only first row Show all	>Lus10001241 pacid=23166305 polypeptide=Lus10001241 locus=Lus10001241.g ID=Lus10001241.BGIv1.0 annot-version=v1.0 MAKVVQGLKSGFFNIVGALKCGGRPTTVDEPVPLSPTPATAAGKSDEIVYAGEAKKQEVVHIGEAREDLYVEASEFKSVQVLKMVRSREPGGAPKGSRPR TG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001241 [exp]	0	1
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	1.4	0.9216
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	4.6	0.9336
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	5.3	0.9150
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	6.3	0.9136
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	8.5	0.9023
					Lus10003137 [exp]	8.9	0.8948
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	10.0	0.9052
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	10.4	0.8957
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	10.5	0.9046
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	11.3	0.8887

Compare expression of checked genes

Lus10001241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.