Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79190 328 / 2e-101 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022448 [exp] 729 / 0 AT1G79190 1267 / 0.0 ARM repeat superfamily protein (.1) Lus10016753 [exp] 712 / 0 AT1G79190 1350 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067700 [exp] 399 / 1e-127 AT1G79190 1410 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001243 pacid=23166297 polypeptide=Lus10001243 locus=Lus10001243.g ID=Lus10001243.BGIv1.0 annot-version=v1.0 ATGAACGGTGGTCCGAGTTCTGTATATGCTGGCACTCTTGATAAGGACACATTGACAAGGACATCATCCATTAGTTTTCTTCCATCTATTATGGAGTTGA GATGTGGTTCTCTTGCCCCTAGTTACCAGAATCTCAAAGATCAGTCTCTTGTTATTCATAGGAAACAAATTGAGTATCCTTTTGAAACTCTCGGGCACAG TTATGAACTTCCACGAATACCACCTTGGTTTGTCCATGTGGGTTATAAGAAGCTATATGACACACTGGCTGGAGTACTGAGACTAGTAGGCTTATCTTTT TACTCTCTCTTGTTGCTAGACCACCGTCAAGGGCATATGGTCGCGATTACAGATATACCACTAGGTCATATACGCAGATTAATTTCTGAGGTTCGCTCCA GAGATGCAAATGAAGGCTGGCAGTATTGGTATAATGGAACTTGGGCTGGAAAGTTAATACGTCAGGCGAGCACTACGGCATGCATTCTAAATGAGATGAT ATTTGGTGTATCTGATAAAGCAGTTGAAGGTATTACTATGTTGTTTCAAAATACCAGGGAGAAGGGGGGAGTTGTTGTACAGTCTGATGTGAGAGGTGCT AGTGCTTGGCCGCCTTCACTTCAGAGCAGAGAAAAAAGTATGGCTTCTGTTTGGAAGGCCTCACAACAAACTGTCAAAAAGAGTCACTTAATTGATTGCA TTGGAAGAGTCTTACATGAGTATCTATCATCTGAATTCTGGAATTTACCCATAGATCACGGGGATCTAGTGGGACACAGTGGCGAGGAAGTTGAAGTTAA CTTGCACTTATTCGAAGGTGCAGCTGCGCTACAACAGGTTGCTATTGATGGAATTGGCATCTTTGCGACCTGCCTTGGAAATGATTTCTCCTCCAGTGGG TTTCTTCACTCTACTCTTTATCTGCTGCTTGAGAACCTTATATCCGCTGATATCCAAGTCAGAACTGCTTCTGATACTGTCCTGCATGTTCTTTCTGCTA CCTGTGGCCATCCAACAGTTGGGCAGTTGGTCTTGGCCAATGCCGATTATGCAGTAGATTCAATATGTCGGCAGTTACGTCACTTGGATCTTAACCCACA AGTCCCGAACGTGCTTGCTTCTATGCTTTCTTATATTGGAGTGACTAATAAAGTACCGCCCCTTTTGGAGGAAACGGTACGGGAATACTCAATCCTTACA CTCTAA
AA sequence Show only first row Show all	>Lus10001243 pacid=23166297 polypeptide=Lus10001243 locus=Lus10001243.g ID=Lus10001243.BGIv1.0 annot-version=v1.0 MNGGPSSVYAGTLDKDTLTRTSSISFLPSIMELRCGSLAPSYQNLKDQSLVIHRKQIEYPFETLGHSYELPRIPPWFVHVGYKKLYDTLAGVLRLVGLSF YSLLLLDHRQGHMVAITDIPLGHIRRLISEVRSRDANEGWQYWYNGTWAGKLIRQASTTACILNEMIFGVSDKAVEGITMLFQNTREKGGVVVQSDVRGA SAWPPSLQSREKSMASVWKASQQTVKKSHLIDCIGRVLHEYLSSEFWNLPIDHGDLVGHSGEEVEVNLHLFEGAAALQQVAIDGIGIFATCLGNDFSSSG FLHSTLYLLLENLISADIQVRTASDTVLHVLSATCGHPTVGQLVLANADYAVDSICRQLRHLDLNPQVPNVLASMLSYIGVTNKVPPLLEETVREYSILT L

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79190			ARM repeat superfamily protein...		Lus10001243 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	1.4	0.9048
AT3G49990			unknown protein		Lus10015447 [exp]	2.4	0.8771
AT3G04490			unknown protein		Lus10042566 [exp]	2.8	0.8742
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	3.0	0.8678
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	9.2	0.9065
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	13.0	0.8484
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	15.9	0.8698
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	22.2	0.8030
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	24.2	0.8728
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	25.9	0.8595

Compare expression of checked genes

Lus10001243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.