Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45970 134 / 8e-38 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT4G17030 132 / 3e-37 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 131 / 1e-36 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 125 / 4e-35 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT1G65680 72 / 1e-14 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT1G65681 69 / 1e-13 EXPB6 beta expansin 6 (.1) AT2G45110 66 / 2e-12 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT4G28250 57 / 3e-09 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 56 / 8e-09 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT5G39290 51 / 3e-07 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042095 [exp] 457 / 1e-163 AT4G17030 139 / 3e-39 expansin-like B1 (.1) Lus10030931 [exp] 342 / 4e-119 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10040115 [exp] 185 / 3e-56 AT4G17030 123 / 4e-33 expansin-like B1 (.1) Lus10003336 [exp] 160 / 2e-47 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 159 / 3e-47 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10001009 [exp] 152 / 2e-44 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 150 / 3e-44 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 147 / 7e-43 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10011012 [exp] 144 / 1e-41 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087000 [exp] 342 / 3e-119 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 333 / 6e-116 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G083200 [exp] 159 / 1e-47 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 152 / 8e-45 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.009G141400 [exp] 142 / 1e-40 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 136 / 2e-38 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.014G066300 [exp] 72 / 2e-14 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 64 / 1e-11 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 62 / 4e-11 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.016G097500 [exp] 59 / 8e-10 AT2G39700 301 / 6e-103 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10001244 pacid=23166302 polypeptide=Lus10001244 locus=Lus10001244.g ID=Lus10001244.BGIv1.0 annot-version=v1.0 ATGGCTAACTCTCTTCAATTCCTTGTTGCAAGTTTTGTACTTCTCTTGATTCACAGTACTGCATCACATGCTGCAACATGCAGAAGTGACTGCTTCACTT CTTCTCGAGCTGCTCACTATCCCAACTCCGAGGAACTCGGAACAGCTTCAGGAGCATGTGGGTTTGGTTCATTTGGAGCAACACTAAATGGAGGAGAAGT AGCTGCTGTTTCTGATCTATACCGTAACGGTATTGGCTGCGGTGCTTGCTATCAGGTTGAACTCCACTTCCGAAAACCAACTCATCGTCGAGACCAAATT CTGGTGAAGTGCACTAATAGCAACTACTGTACAGACAAAGGAACAACAGTCGTGATAACCGACCAAGGAACGAGCCATAACACCGGGTTCATCCTTAGCA GACGAGCCATTTCTGGGATGGCTCAGACTAAAGACTCCGCTGCATCGCTGCTAGCCCTTGGCATCATAGACATCGAATATAAACGCTACCCGAACAAGAA CATAACGATAAAGATTGATGAGAATAGCAACTACCCACACTACCTTGCCTTTGTCATATGGTATCAGCAAGGCCAGCGAGATGTTACTGCTGTGCAGCTC TGTGAGGTATGGAAACAGTTGTCTGGCTGGAATCGGACTAGAACCTTCGGTCAGACCACACAGAATTTCACATGCAAGGTTCTGGAGAGGAGCTACGGAG CAGTGTGGACAGTAACCTCACCTCCTACGGGGCTATTATCGCTGAGGATGTTGTTCACCGACGAAAATGGTGATGAGTCCTGGGTTGTCCCTGCAACTAG CATACCCAGTAACTGGAAAGCTGGAGATTTATATGACACTGGATTGCAAGTGAACCTTTGA
AA sequence Show only first row Show all	>Lus10001244 pacid=23166302 polypeptide=Lus10001244 locus=Lus10001244.g ID=Lus10001244.BGIv1.0 annot-version=v1.0 MANSLQFLVASFVLLLIHSTASHAATCRSDCFTSSRAAHYPNSEELGTASGACGFGSFGATLNGGEVAAVSDLYRNGIGCGACYQVELHFRKPTHRRDQI LVKCTNSNYCTDKGTTVVITDQGTSHNTGFILSRRAISGMAQTKDSAASLLALGIIDIEYKRYPNKNITIKIDENSNYPHYLAFVIWYQQGQRDVTAVQL CEVWKQLSGWNRTRTFGQTTQNFTCKVLERSYGAVWTVTSPPTGLLSLRMLFTDENGDESWVVPATSIPSNWKAGDLYDTGLQVNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001244 [exp]	0	1
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	11.6	0.6358
					Lus10010327 [exp]	13.5	0.5980
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	18.8	0.5996
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	27.3	0.5885
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	56.1	0.5320
					Lus10040805 [exp]	64.5	0.5482
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10000596 [exp]	85.4	0.4995
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	106.7	0.5139
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	151.0	0.4584
					Lus10041324 [exp]	210.2	0.4712

Compare expression of checked genes

Lus10001244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.