Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63050 251 / 3e-80 EMB2759 embryo defective 2759 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079700 [exp] 303 / 2e-100 AT5G63050 337 / 6e-115 embryo defective 2759 (.1.2) Potri.012G088600 [exp] 287 / 4e-94 AT5G63050 334 / 7e-114 embryo defective 2759 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001245 pacid=23166296 polypeptide=Lus10001245 locus=Lus10001245.g ID=Lus10001245.BGIv1.0 annot-version=v1.0 ATGTGTTGGCGCTTTAAGTGCGAGCAGAATGGCTTTGGCGACAAATCAGATGCGGGTAAGTTTTTAAATAAAGGCAGACTCATATTTCAGCTAGTTGATT CTTCTTCAAACTGGAAATCCATGCATGAGCTGAACCCAGTTTGTAAATGTCGATTGTGTGTTTTGTGTGATATGAACTCAGCTAGATACGTAGCTTCGTT TAGGTTTGCCTCTGAAGGAGTTGTGTCTTTTGAAAGGTTGGCTTTAGAATCTCAATTGTCCAGATTTGCTTTTGTTCTCTACCAGGGTTCATATTTAACA GTTCCCTCGAGACCTTCATCATGGACCAAAGGTGTTATACTAAAGCAGCATATCACGTCAATTCACATGGTTGGGAGATTAGATAGGCGTTCTTCTATGA AGTGTCATTTTCGATCAAGTCTGTCTTGTAACTTTAAGAACATATCTGTTAAGCAGAATAGTTTTCACAGTGTAGGGGCTGGCGTTCATGGGCTCAAAGC AAGACTTTTACGAGTTTCATCTTTTCAAGGTAGCCCGAAGAATGATGATGCGAACGACAGATCATGCGGATCCAAAAAAGGTTCAAAGAGTTGTGGTGAG ACCCTTAGAGAGCTTCCCAAGGCGCAAAGTTTACCGATTTCATGCAGTTCTGAACCAAGTGAAGGGCTCGGAGGATCTCCTGCTATTCATAGATTATTCA AGAACTGGTTAAACATGCTGCAGTCACATTCCTCATCAAATCAAGTGGCGGATGGTGTTCTAGGAGGACCGGGTGGTCAACCAGAAGAAGTAGCAGCTGA AACTCAAAATGTCGCTTTAGAGACACAGCCACGTATCATTCTGCTGGATGTTTTCCATCACTTTTGGCAGTTGAGTGCGACAATAAAGATACCAATACTA ATATTTATTCCTTTGTATTTTGCGATCAACAAGACTTATGGGGCTGAAGTGACAAAGGAGTTGACTCCTTTGTGGATTTTGGGACCTCTTGTCGTTGCCC TCTACATCAAGCTGATTCAGGGTATTTCGGCACTGTACTCCTTCAGTTTCAAGCAGACCGTCCAAATAGTGAAGAATTTACCTGCTTACTACAAAGTATC ACGTAGCTACTTTGCAGAAGGGAAGCTGAAGCAAGAGATCGAGACTCGCATTATACAACCCATTGTGAAGATCAGAGACCAGGACCATAAACAAATGGTA ATGGAAGTAATGGCTAAACTGAAGGAATGGTTTATGGAGAAGTACATGGACTTTATCGAAGATATATGGCCTCATTACTGTAGAACAGTTAGGTTCTTGA AGAAGATGAACTTTATATGA
AA sequence Show only first row Show all	>Lus10001245 pacid=23166296 polypeptide=Lus10001245 locus=Lus10001245.g ID=Lus10001245.BGIv1.0 annot-version=v1.0 MCWRFKCEQNGFGDKSDAGKFLNKGRLIFQLVDSSSNWKSMHELNPVCKCRLCVLCDMNSARYVASFRFASEGVVSFERLALESQLSRFAFVLYQGSYLT VPSRPSSWTKGVILKQHITSIHMVGRLDRRSSMKCHFRSSLSCNFKNISVKQNSFHSVGAGVHGLKARLLRVSSFQGSPKNDDANDRSCGSKKGSKSCGE TLRELPKAQSLPISCSSEPSEGLGGSPAIHRLFKNWLNMLQSHSSSNQVADGVLGGPGGQPEEVAAETQNVALETQPRIILLDVFHHFWQLSATIKIPIL IFIPLYFAINKTYGAEVTKELTPLWILGPLVVALYIKLIQGISALYSFSFKQTVQIVKNLPAYYKVSRSYFAEGKLKQEIETRIIQPIVKIRDQDHKQMV MEVMAKLKEWFMEKYMDFIEDIWPHYCRTVRFLKKMNFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	0	1
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	3.3	0.8440
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	5.7	0.7580
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	8.5	0.7661
AT1G06510			unknown protein		Lus10031459 [exp]	10.6	0.7663
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	13.5	0.7839
AT4G30845			unknown protein		Lus10002320 [exp]	14.4	0.7984
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	16.6	0.7390
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	21.2	0.7111
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	25.3	0.6878
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10034149 [exp]	29.1	0.7664

Compare expression of checked genes

Lus10001245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.