Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24680 373 / 6e-107 MOS1 modifier of snc1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042094 [exp] 2477 / 0 AT4G24680 656 / 0.0 modifier of snc1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079800 [exp] 916 / 0 AT4G24680 518 / 2e-158 modifier of snc1 (.1) Potri.012G088500 [exp] 849 / 0 AT4G24680 532 / 2e-163 modifier of snc1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001246 pacid=23166295 polypeptide=Lus10001246 locus=Lus10001246.g ID=Lus10001246.BGIv1.0 annot-version=v1.0 ATGACTGTTTTAGGGAAAGTGGCTGTACCAAAGCCAATTAATTTGCCCAGTCAGAGGTTGGAAAATCATGGTGTCGACCCAAATGTTGAAATTGTTCCCA AGGGGACCCATAGTTGGGGTAGTAAGTCATCCTCATCCTCATCAAACGCATGGGGGTCTTCTACACTGTCTCCGTCTGATGGTGGTAATGGTTCCCCTAG CTATCTTAGTGGCCGTCCTTCATCTGGTGGAAGTGGCACAAGGCCATCAACTGCAGGGAGTGATAGGGGCAATGAACCCATTGCTAATGCGTGGAATTCA AACTCTAGGCCATCTTCTGCCTCAGGTTCAGTGACGTCAAATCGGGCATCACTTGGTTCGTCCCGTCCTCGTAGTGCTGAAACAAGGCCTGGTAGCTCTC AGTTATCTCGGTTTGCAGAACCTTTGTCGGATAATTCAGTACCATGGGGTTCACTTGGAACAGCTGAAAGATTGGGGGTTCCATCTTCGAAAAATAATGG ATTTTCACTCACTTCTGGTGATTTCCCGACTCTTGGCTCAGAAAAGGAAGATTTTGAGAAGAACACAGATCTACCAGAACATGGCTATCGCCGTGACTCG CCCTCTGATGGAGCACCAGTGGAAGAGACAGGAGCTGTTGCCGTAGGTGAGGATTATGGACCTGTGGATGTGAAGAGTGACAATGCAAATTCATGGGGAA GAGAGGACTCCTTTTATGTGAAAGAGGGAGTTAGGCCCAATGCTGAGAAATGGCATCCTGATCCTCAGTCATATCCTAATGCAGCTATGCCTCAACATTT TGATGCTTGGCATGGCCGTCCTGTAAATAATCATCCAGGTGGTGTTTGGTATAGGGGTCCTCCAGTCGGTCCTCCATTTGGGGCTCCAGTTGGGCCTGGT GGATATCCTATGGAGCCGTTTCCTTATTACCGGCCTCAGATTTACCCTGGTGCACAGCCAGGGCCTCCGCCATCTGCTGGACCAAGAGGGCCTCATCCAA AACATGGTGATGTCTTCAGACCCCCAATGCATGATGGCTATCTTCGCCCTGGCATGCCGATTAGACCTGGATTTTATCCTGCCCCAGTTCCTTATGATGG ATATTATGGTCCTCCAATGCCATACAACAATGTTAGTGAGCGAGATGTTCCTTATATGGGAATGGCTGTAGGTCCTGCTGCATATACCAGATATCCAAAT CAAAATTCTCATGACTCTGGCAATCCCCATGGAAGATCTAGTGGGTTTGGTTCTAATGCAAAAGGATTGGTTTCAGAGCAAATGGAATCAGACCATCCCC ATGACCCTCAAGGTCCGTATAAAGTTCTTCTTAAGCAACGTGATGGGTGGGAGGGAAAAGATGCAGCGCAAATGTGGGATGATGACAAGGCAGCTAATGC CGTGCATATTGGGAAGGGAGACCAATCAAGAAAGTCAAGTTTGGAGAATGGATGGAGAACAGATAATCTCAAGAGAACTGAAGATGTTGGAACACGAAGA CCGCTTTCTGAGGGACATTCTTGCGCTGCTGACAATATAAGTGGTGCTCCAGCCAAACTGAAATCTGCCGGTCATGGTGGAAATTCAAATACACTTGATT GTTCGGTTGATAAGATATCAGAGCATGCAGAAGACGAAGATTCGATATCAGAATCATTATCATTTTCTAGAGACCCAAATCTTATTAAGAAAATTGAAGG GTTGAACGCAAAGGCTCGCGCTTCTGATATGCATGATGCGAATGATAAAAAACATGAAGGAATCAGGACAAATCATCCTGTAAATGAAGTCACAAGTGTT TCTGTTTCTACGGAACGTGTATTGGCTCAAGGACTCTCTGCCGATTCCAATGATCAGATTTCTGGTAGAGATAAAAGTCTTGACTTGACAATGACTAGTG GAGCTGCTATGGCAAGATGCAACAGGAGACCGACTCAGGCTGTGCAGATCAGATCTGATCATCGTGGTAAAGGAAGAACTAATGCTCAGGATATTGATGC TTGGAGGCCAAGACTTCATGTTGAAGAATCACATAATGGTGTTTCAAGTGCACATGTAAGTTCGGTTCTGCAGGGGCAAGATTTGTCTACTGAGGCTGCC GAAAAGTCTGTTCCACTTCTAGGCAACGATGAGGAGTCAATGCCGCAGGCATCTGAACCAATTGATAGTCAGGCACAGCGAGCTAAGATGAGAGAGCTAG CTCGACAGCGACTCAAGCAAAGAGAGAAAGAAGAAGAAGAGCGAACAAGAGAACAGAAGGCCAAGGCTCTTGCAAAGCTAGAAGAGTTGAACAGGCGGAT GCAAGCTGGGGAAAGTTCATCTAAGAAGCATGAAGCCATGCCAAGTAGTAATTTGTTGAATAAGCCAGAGGAGTTGCTAAATTCTGTGCAACCACCTGTC ATTGTCAAGGCATCTACAGATAGTTCTATTATCGCTTCGGACTCAGTTGCAGTGGCACATACTAATGACAGAATTATCAACAGAGTTGAAATACCTACCA TTCTGTCTAAAGAGGTCAAGAATGCTACTAAAGCACCTGTCATGATGCATGATCCATCTAATACACTGAATCTGGATTCCGGTGCAGCTCGTTGTGATGA TGTGTTTAATGATGTTGCACATGATTATGAAGGAAAGGCTTCGAAGCAAAAGCGAATGGCCTATAGGCCAAAGCAGAATAATTCAAGTGACAAGGCTGCA ACTGGAGCATCAAAAAGTGATACTGACACAATTCTTTATGCGTCTCTTCCTCCTCAGAGTGCTGCTCATGATACTGTTTCAAACCCTGTCAGCCCAAGTC CTACAGCCGAGGTTTCAGCACATCCTAGGAGAAAAAATAGGAGTACAAGAAACAAGCACAAAGTGGAGGAGACATCTTCAACTGCAGTATTGCCATCTGC GGCTTTGAAGAATACTCCTTCAGAAGCTTCAAATGACGGTATCAAACCAAAAACTCCAGAATCTGTTACAGTTGCTACTTCAGTGCAGCCTGTCCCTGAT TGCAAAGGTGCAATTCACCATTCGGAGCAACATCCAACTTCTCCGAATGAAGATGGACAGATCAAAGTAAATAACCAGTGGAAACCACAACATTCTCGAA AGATGCCAAGGAATCCGCAGGGTAATAAAGCAATGGATAAATTCCATGGAAATGATACTGTTGTCTGGGCTCCAGTACGGACGAACATTAAACCTGAAGG TGCTGATGAAGGCAGTAAGCAAAGTGCAGTGGATGTTGCTAGTCTGCCTGTAAAGAGCGATCAGCAGGTGCATAATAATACAAAGAACAAGAGAGCTGAA ATGGAGAGATATGTTCCGAAGCCAGTTGCCAAAGAAATGGCTCAGCAAGGAAATGCTCACCATTCTGTGGCTTCTTCAACTGTCCAGATACCCTCGGATG AAACTGTTAGAAAATCTGAACCTGTTCCTTTGGCACCCGAAAGTTCACAAACCACCTTCACCCTTAAGTTTGGATCCTTTGCCGAGTCTGAGAATGTGGA CGCCAAACAGAGCAAGTCTGGGAAAGTACATGGGTCGTGGCATGAACGATCTTCTGCAGAAATACAGACTTCTAGTTCAAATCTGGGTGGGGATTCTCAG AAGCCAATCAAGAGTCAGCAAATTCAGAAGTCAGACACAGGATCAATCAAAGAGCAATCAGGACAAAATGATGAATGGTCAGATGGATGGACCATGCCTG AGAATCCTGATACAGCACCAGCAATTCCTAGTGTAAAGGATCAGGGAGGTACATCAAGAGGGAGGCGTCAGCCGCACAAGGGTAGAGGACACAACTACGA CATTATTGAGAGGAAAACTGGCAATGGGGCCAATGAAAAGGTTAATACCCTTTCTTCAGCTGTGGAGCCGCACCAACCGGGTGTAATGCCGACATCAAAA GAATACTCAGGTGTTGGAGAACGATCTACATCCCAATGGCAACCTAAGTCTCAGTCAACTTCTGCTACTGGCCAACGGGGAATCAGGCCAAATGCTGCTC CGGAAACTAGTAGTAGGCCAAATAAAAGGAGTTTGGCATCTGTGCCGCCTCAAACACAGGATGTAGCTGGAGGGTCAACCGAACAGCACACGGATCAATC TGCCACTGACAAGGGAAATTATGTAGAAGACTTCAATCAAGGTGCTAGGAGGGAGAGGAAGATGACTTCTCACAAAGGTCATGCCCGTAACCCTGCAGAG GCAGCTTATGCTGCAAATGCAGATAACCGTAATGAACAATACCAAAACTACTCGTCAGGGTATCGAACGGGCGGAAACCAGAATAATCAGGTCAACAGGG ATCAAGAGGCTCGTGGGGAGTGGAGTCGAAGCGAGAAAGATAACAAGCACCATAATGTAGCAGCAGGAAACAGGGAAAGGCAGAGACAAGGTACACATTA CGAGTACCAGCCGGTCGGCAATAAAAACAAGGGAAATAACTTTGAGCCTTCAAGAGATGGATCTCAAACTTCAGGTCCAAGGTTTAGGGAAAGAGTGCAG AATCATCCAAGGCGTGGCGATTTTCATGGACGTCAAACCAACAGCATGCGGGGAGATACTACTACTACTAATTTTGATTAG
AA sequence Show only first row Show all	>Lus10001246 pacid=23166295 polypeptide=Lus10001246 locus=Lus10001246.g ID=Lus10001246.BGIv1.0 annot-version=v1.0 MTVLGKVAVPKPINLPSQRLENHGVDPNVEIVPKGTHSWGSKSSSSSSNAWGSSTLSPSDGGNGSPSYLSGRPSSGGSGTRPSTAGSDRGNEPIANAWNS NSRPSSASGSVTSNRASLGSSRPRSAETRPGSSQLSRFAEPLSDNSVPWGSLGTAERLGVPSSKNNGFSLTSGDFPTLGSEKEDFEKNTDLPEHGYRRDS PSDGAPVEETGAVAVGEDYGPVDVKSDNANSWGREDSFYVKEGVRPNAEKWHPDPQSYPNAAMPQHFDAWHGRPVNNHPGGVWYRGPPVGPPFGAPVGPG GYPMEPFPYYRPQIYPGAQPGPPPSAGPRGPHPKHGDVFRPPMHDGYLRPGMPIRPGFYPAPVPYDGYYGPPMPYNNVSERDVPYMGMAVGPAAYTRYPN QNSHDSGNPHGRSSGFGSNAKGLVSEQMESDHPHDPQGPYKVLLKQRDGWEGKDAAQMWDDDKAANAVHIGKGDQSRKSSLENGWRTDNLKRTEDVGTRR PLSEGHSCAADNISGAPAKLKSAGHGGNSNTLDCSVDKISEHAEDEDSISESLSFSRDPNLIKKIEGLNAKARASDMHDANDKKHEGIRTNHPVNEVTSV SVSTERVLAQGLSADSNDQISGRDKSLDLTMTSGAAMARCNRRPTQAVQIRSDHRGKGRTNAQDIDAWRPRLHVEESHNGVSSAHVSSVLQGQDLSTEAA EKSVPLLGNDEESMPQASEPIDSQAQRAKMRELARQRLKQREKEEEERTREQKAKALAKLEELNRRMQAGESSSKKHEAMPSSNLLNKPEELLNSVQPPV IVKASTDSSIIASDSVAVAHTNDRIINRVEIPTILSKEVKNATKAPVMMHDPSNTLNLDSGAARCDDVFNDVAHDYEGKASKQKRMAYRPKQNNSSDKAA TGASKSDTDTILYASLPPQSAAHDTVSNPVSPSPTAEVSAHPRRKNRSTRNKHKVEETSSTAVLPSAALKNTPSEASNDGIKPKTPESVTVATSVQPVPD CKGAIHHSEQHPTSPNEDGQIKVNNQWKPQHSRKMPRNPQGNKAMDKFHGNDTVVWAPVRTNIKPEGADEGSKQSAVDVASLPVKSDQQVHNNTKNKRAE MERYVPKPVAKEMAQQGNAHHSVASSTVQIPSDETVRKSEPVPLAPESSQTTFTLKFGSFAESENVDAKQSKSGKVHGSWHERSSAEIQTSSSNLGGDSQ KPIKSQQIQKSDTGSIKEQSGQNDEWSDGWTMPENPDTAPAIPSVKDQGGTSRGRRQPHKGRGHNYDIIERKTGNGANEKVNTLSSAVEPHQPGVMPTSK EYSGVGERSTSQWQPKSQSTSATGQRGIRPNAAPETSSRPNKRSLASVPPQTQDVAGGSTEQHTDQSATDKGNYVEDFNQGARRERKMTSHKGHARNPAE AAYAANADNRNEQYQNYSSGYRTGGNQNNQVNRDQEARGEWSRSEKDNKHHNVAAGNRERQRQGTHYEYQPVGNKNKGNNFEPSRDGSQTSGPRFRERVQ NHPRRGDFHGRQTNSMRGDTTTTNFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	0	1
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	5.2	0.9520
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	5.4	0.9589
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	7.1	0.9499
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	7.3	0.9544
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	8.1	0.9470
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	10.2	0.9468
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	11.0	0.9513
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	11.0	0.9393
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	13.4	0.9411
AT5G65950			unknown protein		Lus10041289 [exp]	13.5	0.9039

Compare expression of checked genes

Lus10001246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.