Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17100 142 / 5e-42 SOUL heme-binding family protein (.1) AT1G78450 101 / 3e-26 SOUL heme-binding family protein (.1) AT1G78460 100 / 4e-26 SOUL heme-binding family protein (.1) AT5G20140 54 / 1e-08 SOUL heme-binding family protein (.1.2) AT2G37970 47 / 2e-06 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 42 / 0.0002 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042093 [exp] 402 / 1e-144 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1) Lus10013045 [exp] 162 / 4e-50 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1) Lus10012559 [exp] 137 / 3e-39 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1) Lus10041532 [exp] 134 / 8e-39 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10029117 [exp] 127 / 2e-36 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1) Lus10017193 [exp] 62 / 1e-11 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10022712 [exp] 50 / 5e-07 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10027752 [exp] 46 / 5e-06 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10000227 [exp] 46 / 7e-06 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088400 [exp] 289 / 5e-100 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.015G080000 [exp] 287 / 2e-99 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 172 / 9e-54 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.001G379000 [exp] 142 / 5e-42 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 101 / 3e-26 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 57 / 5e-10 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 54 / 2e-08 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.016G098500 [exp] 48 / 2e-06 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10001247 pacid=23166303 polypeptide=Lus10001247 locus=Lus10001247.g ID=Lus10001247.BGIv1.0 annot-version=v1.0 ATGGAGAAACCGAGGATGTGGATCGTAGCCTTGAGTCTACTCGCCTTGTTGGGTTCATCGGCGGCGATCGAGTCACCCCAGTACTCAGTTGTCCACGAAG AATCCGATTTCGAGATCAGATTGTACAGAGAATCCACCTGGATGACTGCCCATGTCGATGAACTTTCCTTCCAGAAAGCCACTTTGCTCGGCTTTCACAG GCTGTTCCAGTTCATCCAAGGAGCCAATCTGAACTATTCCAGGGTTCCAATGACATCTCCAGTAGTGACCAGCATAGTTCCAGGGTCCGGTCCATTCCAC TCATCGTCCTATTCAGTACGATTCTACTTGCCCGTCGAGTTCCAGGACGACCCACCGACCCCTCTCCAGCAGCTGGAGCTGAAACCATTCGAATGGGATG CCCACTGTGTCGCTGTCAGGAAGTTCTCTGGGTATGCAAAGGATGAAAACGTCGTGAAAGAAGCTGAGAAGCTCGCTTCAAGCTTGAGCAGGTCGCAATG GGCTCTTCCAGCAGACGAAATTGCCGGGTGTGCATACTCGATAGCGCAGTATGACTCCCCTTTTCATTTCATCGGGCGTGTTAATGAAGTGTGGGCTGAT GTGAAAGGCTCTGTTGAGGATGACTGTGGTTGTTCCAGTGGGCTAGCAGCAACTTACTAA
AA sequence Show only first row Show all	>Lus10001247 pacid=23166303 polypeptide=Lus10001247 locus=Lus10001247.g ID=Lus10001247.BGIv1.0 annot-version=v1.0 MEKPRMWIVALSLLALLGSSAAIESPQYSVVHEESDFEIRLYRESTWMTAHVDELSFQKATLLGFHRLFQFIQGANLNYSRVPMTSPVVTSIVPGSGPFH SSSYSVRFYLPVEFQDDPPTPLQQLELKPFEWDAHCVAVRKFSGYAKDENVVKEAEKLASSLSRSQWALPADEIAGCAYSIAQYDSPFHFIGRVNEVWAD VKGSVEDDCGCSSGLAATY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17100			SOUL heme-binding family prote...		Lus10001247 [exp]	0	1
					Lus10000377 [exp]	8.8	0.6622
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	9.1	0.6680
					Lus10012353 [exp]	24.1	0.6498
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10004663 [exp]	24.7	0.6168
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	31.7	0.5923
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10038782 [exp]	35.2	0.6104
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	58.2	0.5963
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	82.2	0.5261
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	91.7	0.5659
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10039171 [exp]	129.3	0.4958

Compare expression of checked genes

Lus10001247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.