Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63080 206 / 9e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G06550 48 / 3e-06 unknown protein AT1G78280 48 / 4e-06 transferases, transferring glycosyl groups (.1) AT3G20810 45 / 2e-05 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042091 [exp] 276 / 2e-93 AT5G63080 164 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016202 [exp] 56 / 1e-08 AT5G06550 724 / 0.0 unknown protein Lus10029343 [exp] 53 / 7e-08 AT5G06550 730 / 0.0 unknown protein Lus10010350 [exp] 53 / 8e-08 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10036482 [exp] 52 / 2e-07 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1) Lus10031818 [exp] 46 / 1e-05 AT3G20810 497 / 1e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10031247 [exp] 46 / 1e-05 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10037290 [exp] 39 / 0.0007 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080400 [exp] 280 / 2e-92 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G065400 [exp] 54 / 4e-08 AT5G06550 711 / 0.0 unknown protein Potri.002G099400 [exp] 54 / 5e-08 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1) Potri.001G016200 [exp] 48 / 4e-06 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10001249 pacid=23166306 polypeptide=Lus10001249 locus=Lus10001249.g ID=Lus10001249.BGIv1.0 annot-version=v1.0 ATGAAGACCAGTGTTTATGATATATTGGATGATGTTAATGACGTCAAATATCCAGGTTTTAAGAAGGCTGTTTGGTTGACATGTACACAAGAGGAGGGTG AGATCATTTTTGTACCTAGTGGATGGTATCATCAAGTCCAGAACCTGGAAGATACCATATCAATAAACCATAATTGGTTCAATGGGCATAACCTTTCTTG GGTGTTTAATCTTCTATTAAGAGACTACAAAGAGGCAAAAGAGTACATAGAAGACATCCGGGACATCTCTGATGACTTTGAAGGTCTCTGCCAGCGAAAC CTTGCTGCCAACACAGGCATGAATTTCGTTGACTTCTTTGTTTTTCTGCTGCGGTTCTTCTTGGCAAACCTCGTCCAAGTCTTCCGTAAATCATCGGCAT CAAGTCCATCCGAATTAACTCAACATTTCACTTTCAATTTGTCAACCATCCGGAGGATGGCGGTGAAGATGGAGCAATCAGTAGATGGCCTGGCGGGGTA TCCCGGATTCGCAACGAACCTAAAGGAAACTTTGGATGATCCGGAGTTCCTCGAACTGTGTATTGATGTGGGCAAAACATACGGGACGATACACGATCAG ATGAGTAGCAGTTCGGATGCAAGCGAGTTCCAAATCGGCGAAATCATGGACACTGGCTCTCATATCCTCAGAACCAAAGGCTTTGTCAAGTTCACCGACT TCGCCCTGGAAAAACTCAGTAGCAACTGCTTTTACGGGAAGAAGTTTTGGTAG
AA sequence Show only first row Show all	>Lus10001249 pacid=23166306 polypeptide=Lus10001249 locus=Lus10001249.g ID=Lus10001249.BGIv1.0 annot-version=v1.0 MKTSVYDILDDVNDVKYPGFKKAVWLTCTQEEGEIIFVPSGWYHQVQNLEDTISINHNWFNGHNLSWVFNLLLRDYKEAKEYIEDIRDISDDFEGLCQRN LAANTGMNFVDFFVFLLRFFLANLVQVFRKSSASSPSELTQHFTFNLSTIRRMAVKMEQSVDGLAGYPGFATNLKETLDDPEFLELCIDVGKTYGTIHDQ MSSSSDASEFQIGEIMDTGSHILRTKGFVKFTDFALEKLSSNCFYGKKFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	1.0	0.9458
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	3.5	0.9295
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	4.6	0.9261
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	6.3	0.9179
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	6.9	0.9130
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	7.1	0.9093
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	7.4	0.9178
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	8.4	0.9105
AT2G30270			Protein of unknown function (D...		Lus10042235 [exp]	9.5	0.9059
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	9.8	0.8973

Compare expression of checked genes

Lus10001249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.