Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17440 108 / 2e-27 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006528 [exp] 278 / 2e-91 AT1G17440 280 / 4e-86 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169900 [exp] 134 / 1e-36 AT1G17440 267 / 2e-80 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.003G064100 [exp] 121 / 7e-32 AT1G17440 266 / 1e-79 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001251 pacid=23171875 polypeptide=Lus10001251 locus=Lus10001251.g ID=Lus10001251.BGIv1.0 annot-version=v1.0 ATGTCACGTCTTAGCCAAATGAACCAGCAGCAGCAGCAGAACCAGTTTGGCGGCGTTCTGAGGCAGCAGCAGAAGCAGCAGGGGATTTATGGGCAAATGA ATTTTGGGGCTGCTGGGTCAGCCTCACTTCAACAGAGTATGCAGCAGAATTCTCAGAATCAAATGGGGGTTGGTGGTAATACTGCTCCCAATTTACCTCG CTCTGCTCTTCTTGGACAGACTGGCCACCTCCCCATGTTGACCGGGGCCTCCACTGGTCACTTGAGCTTGCAATCTCAGTTATTGACCTCTCCAAGGCAG AAAGCTGGATTGGGGCAAGGATCTCAATTCCATTCAGGAAATCCTGCTGGGCAGTCAATACCAGGCATGCCGGGAGTGGGAATGATGGGATCACTTAATC TCACCTCCCAATTAAGACCTAATGGTGCTCTTGGATATGCTCATCAGAGGACGATGAATGCAGGACAGTTGCGGCAGGCACTGGCACAGCAAAATACCCT GAGCTCCGCACAGGCATGCCATTCTTATACTTGTCATCCCTTCTTTTCAGATAATCAACAATTTTTCAGTTTTGTTCATTCACTATTTCTGTTTTCTGCT AGCGGTTATCCCCTGCTGAACATGAGATAA
AA sequence Show only first row Show all	>Lus10001251 pacid=23171875 polypeptide=Lus10001251 locus=Lus10001251.g ID=Lus10001251.BGIv1.0 annot-version=v1.0 MSRLSQMNQQQQQNQFGGVLRQQQKQQGIYGQMNFGAAGSASLQQSMQQNSQNQMGVGGNTAPNLPRSALLGQTGHLPMLTGASTGHLSLQSQLLTSPRQ KAGLGQGSQFHSGNPAGQSIPGMPGVGMMGSLNLTSQLRPNGALGYAHQRTMNAGQLRQALAQQNTLSSAQACHSYTCHPFFSDNQQFFSFVHSLFLFSA SGYPLLNMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10001251 [exp]	0	1
AT2G05710		ACO3	aconitase 3 (.1)		Lus10015116 [exp]	2.0	0.7749
AT3G19780			unknown protein		Lus10040970 [exp]	8.0	0.7625
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	13.2	0.7494
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	15.0	0.7512
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	19.4	0.7325
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	22.5	0.7532
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	23.2	0.7416
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	24.7	0.7247
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	36.0	0.7370
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	42.3	0.7200

Compare expression of checked genes

Lus10001251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.