Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01370 61 / 3e-10 ACI1 ALC-interacting protein 1 (.1) AT5G58630 44 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002480 [exp] 513 / 0 AT5G01370 81 / 1e-16 ALC-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117400 [exp] 93 / 9e-21 AT5G01370 85 / 1e-17 ALC-interacting protein 1 (.1) Potri.009G046900 [exp] 57 / 9e-09 AT5G58630 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001252 pacid=23166958 polypeptide=Lus10001252 locus=Lus10001252.g ID=Lus10001252.BGIv1.0 annot-version=v1.0 ATGGAAGAAGATCAGCCTCCCCCCCCTCCTCCTCCTCCGGCTGTTTCTCCACCGTTGCACGGCTGCTTCTCTGCAAACGAAATCTCCAAACCCACCCTAG ATCACACACCTGACCGTTTGACTCAGAGTCAGAACAAAGATCATTACTTTGACTGTCAAGAAGTAGCTAATGACGTCGGAATCCAGATCAGTACTCCGGC GGCTCCTGCGCCAGGCGTGGTGGCTAGGCTAATGGGCTTGGAGTCACTCCCGCCGACGCCGGTGAGACGTAGAGCATCCTCGGCGGTCGAGGACTCTGTT ACCAGAAGCAGGTCGGTGAACTTTATGGATTACTACTTGCTCCAGCACGATTTGGACTTCTCCTCTACTTCTTTCAACGCCCGTCATCGTCGGGTCAGAA CTTCAGTCTCGTTCAGAGAAGTGTCTCCGGCGCCGGATTTCATACTCCTTTACTTGGAAGGTACTAATAATTCCAAGGTGGAGAAACCCATGAAGAGCAC AACTCCGAAAGTGATCAGGAAAAGGGAGCAGAAGAAGGAAGTGATTGGAAACAAGAAAACAGAGCAGAAACAGAGAGCAAGAAAACAGAGTACTCAGCCA GCTGTCAACAACAATGACAGAGGTCAGCAGAAGAAGAAAGTTAGCCATAATCGTAGGAGGAAATGTGCAGTGAGACAGAAAGAAGTTGCGGTAGAGTCCA ATTTCATGAAGAAGATCAAGAATCGGAAATTTGTCATCGATGGAACTGGGAGTTCATGTCCAATTAGCTCGGCCCCTCCACCACTGTCAGGCGAGAAAAC TTGCGAAAGGAAACTTGAGCGGGAGAAGTCGCCGGCGGCGAAGAACCACGACGAGACGGAGAGATATGTAGCGAAGCTGACGGAGGAAGATGTAAAATTG AGCTTCTGGGTAGCTTCTAAGGGTGGTAATGTAGCTGAATACAAAGGTTTTGAAGAGATGTGTGAGGATTTCGAGCAGGAGTTGCTGGATCTGCTAGTTG AAGAACTTGTTTCCGGGTGA
AA sequence Show only first row Show all	>Lus10001252 pacid=23166958 polypeptide=Lus10001252 locus=Lus10001252.g ID=Lus10001252.BGIv1.0 annot-version=v1.0 MEEDQPPPPPPPPAVSPPLHGCFSANEISKPTLDHTPDRLTQSQNKDHYFDCQEVANDVGIQISTPAAPAPGVVARLMGLESLPPTPVRRRASSAVEDSV TRSRSVNFMDYYLLQHDLDFSSTSFNARHRRVRTSVSFREVSPAPDFILLYLEGTNNSKVEKPMKSTTPKVIRKREQKKEVIGNKKTEQKQRARKQSTQP AVNNNDRGQQKKKVSHNRRRKCAVRQKEVAVESNFMKKIKNRKFVIDGTGSSCPISSAPPPLSGEKTCERKLEREKSPAAKNHDETERYVAKLTEEDVKL SFWVASKGGNVAEYKGFEEMCEDFEQELLDLLVEELVSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10001252 [exp]	0	1
					Lus10039892 [exp]	8.7	0.8789
					Lus10038642 [exp]	13.0	0.8754
					Lus10043100 [exp]	15.1	0.8734
					Lus10007688 [exp]	15.7	0.7373
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	17.7	0.8719
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10040055 [exp]	18.7	0.6794
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	19.4	0.8648
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	21.8	0.8646
					Lus10032968 [exp]	23.2	0.8639
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	25.6	0.8612

Compare expression of checked genes

Lus10001252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.