Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47300 251 / 5e-85 SELT SELT-like protein precursor (.1) AT5G58640 236 / 6e-79 Selenoprotein, Rdx type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002479 [exp] 349 / 3e-123 AT3G47300 270 / 3e-92 SELT-like protein precursor (.1) Lus10040658 [exp] 191 / 1e-61 AT3G47300 245 / 2e-83 SELT-like protein precursor (.1) Lus10018247 [exp] 156 / 7e-48 AT3G47300 205 / 2e-67 SELT-like protein precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117600 [exp] 290 / 5e-100 AT5G58640 224 / 4e-74 Selenoprotein, Rdx type (.1.2) Potri.009G047000 [exp] 223 / 8e-74 AT3G47300 255 / 1e-86 SELT-like protein precursor (.1) Potri.001G253000 [exp] 221 / 1e-72 AT3G47300 253 / 2e-85 SELT-like protein precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF10262 [flax] [poplar] Rdx Rdx family
Representative CDS sequence Show only first row Show all	>Lus10001253 pacid=23166964 polypeptide=Lus10001253 locus=Lus10001253.g ID=Lus10001253.BGIv1.0 annot-version=v1.0 ATGGATCGATCTCAAATTCTGCTGCTGGGATTGCCGATCTTCCTGTTCTGCTCCGATATAGCCAACCTCTTCTTAACCTCTCCCCCACCTCCCAAACCAG CTAAGCATGGCGATATTCAAATCAATCCGATCCCACCTATGCAGCAACAGCAGCCGCCTCTCCAGTTCCCCACCCAGGTGCAGAAATCGGCCGTCATCGG AGGAGCTGGCAGTGTCGGCATTGGCAACACCGTCAACTTCAATTTCTGCACTTCTTGTTCTTACAGGAGCAGAGGGTCAGCTGTAAACATGAAAAAAATG TTGGAGAACGAGTTCCCTGGATTGGAAGTGATACTCTCGAACTACCCTCCACCGCTGCCAAAGCGTCTTCTTAGCAAAGTGGTTCCAGTGTTTCAGTTTG GGATGATCGGCTTGATAATGGGAGGTGAGCAGATCTTCCCCAGGTTGGGATTTGCTGCTCCGCCTGCTTGGTACTATTCCTTGAGAGCCAACAGATTTGG AAGCATTGCAAGCACCTATCTTTTCGGAAACTTCGTTCAGTCGTTCCTCCAGAGCTCTGGAGCTTTTGAAGTCTACTGCAATGGCCAAATGGTGTTCTCG AAGCTGCGAGAGCACAGGTTCCCTGGTGAGATTGAGCTGAGGGATATAGTTGGGAAGAAGCTTGGTTATTCTGCAACGGTCATTTAA
AA sequence Show only first row Show all	>Lus10001253 pacid=23166964 polypeptide=Lus10001253 locus=Lus10001253.g ID=Lus10001253.BGIv1.0 annot-version=v1.0 MDRSQILLLGLPIFLFCSDIANLFLTSPPPPKPAKHGDIQINPIPPMQQQQPPLQFPTQVQKSAVIGGAGSVGIGNTVNFNFCTSCSYRSRGSAVNMKKM LENEFPGLEVILSNYPPPLPKRLLSKVVPVFQFGMIGLIMGGEQIFPRLGFAAPPAWYYSLRANRFGSIASTYLFGNFVQSFLQSSGAFEVYCNGQMVFS KLREHRFPGEIELRDIVGKKLGYSATVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	0	1
					Lus10036954 [exp]	2.0	0.8898
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	2.4	0.8894
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	3.5	0.9279
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	3.7	0.9097
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	4.2	0.9029
AT3G15351			unknown protein		Lus10015973 [exp]	8.6	0.8366
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	11.0	0.8821
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	13.1	0.8430
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	15.0	0.8757
AT4G30010			unknown protein		Lus10015329 [exp]	17.0	0.8710

Compare expression of checked genes

Lus10001253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.