Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 79 / 6e-18 transducin family protein / WD-40 repeat family protein (.1.2) AT4G35560 41 / 0.0001 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002478 [exp] 148 / 6e-47 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2) Lus10027810 [exp] 105 / 2e-29 AT5G05570 84 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009082 [exp] 88 / 7e-21 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10037841 [exp] 63 / 4e-12 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10030399 [exp] 63 / 4e-12 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10005040 [exp] 45 / 1e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117800 [exp] 97 / 5e-24 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G101600 [exp] 88 / 3e-23 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117700 [exp] 80 / 3e-20 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G187700 [exp] 79 / 1e-17 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 63 / 2e-12 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G101600 [exp] 44 / 2e-05 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001254 pacid=23166955 polypeptide=Lus10001254 locus=Lus10001254.g ID=Lus10001254.BGIv1.0 annot-version=v1.0 ATGTTCTGCGGCTGTCTTTCTGAGTCTCAATCTTACAAGAGCCCTTCGCCGGTGGCAAAAGCATCATCATCATCCCATGGTAAGAAAAACACGATGATCG CCAGAAAACTTCAGATGATTCTTCTGTTACGTTTACTCCATCAATTTGATCAAATGGGGTTTTTTCTCTGTACAGAAAGGGCAAAGCTTTTAGGTTCAAA AGGTGCAATAAGGCCTAAACCAATGAATCCAGACGCAATCAGATCCAAGTATAGAAAATCTGCTAATGTGAAGTCAGCGGCTGCACATGCAAAGAACAAG CTGGTAGAGAGGAAAGAAAAGCTTGAGAAAATCAGTCTGCGGTCAGCGGAGCTGGAAGGAAGAGCACAAGACTATGCATCAATGGCAAAGGAGCTTGCTG ACATAATGGAGAAGAGGAAGAAATGGTGGCAACTGTGA
AA sequence Show only first row Show all	>Lus10001254 pacid=23166955 polypeptide=Lus10001254 locus=Lus10001254.g ID=Lus10001254.BGIv1.0 annot-version=v1.0 MFCGCLSESQSYKSPSPVAKASSSSHGKKNTMIARKLQMILLLRLLHQFDQMGFFLCTERAKLLGSKGAIRPKPMNPDAIRSKYRKSANVKSAAAHAKNK LVERKEKLEKISLRSAELEGRAQDYASMAKELADIMEKRKKWWQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	2.0	0.9458
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	4.2	0.9202
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	4.7	0.9327
					Lus10004778 [exp]	5.2	0.9292
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	5.3	0.9287
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	5.5	0.9230
AT2G22560			Kinase interacting (KIP1-like)...		Lus10002655 [exp]	6.5	0.9029
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	7.0	0.9114
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	8.0	0.8976
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	9.4	0.8331

Compare expression of checked genes

Lus10001254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.