Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 218 / 7e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 191 / 2e-61 Protein of unknown function (DUF567) (.1) AT2G14560 173 / 1e-54 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 169 / 1e-52 Protein of unknown function (DUF567) (.1) AT3G16900 149 / 2e-45 Protein of unknown function (DUF567) (.1) AT3G56180 102 / 4e-27 Protein of unknown function (DUF567) (.1) AT3G15810 92 / 7e-23 Protein of unknown function (DUF567) (.1) AT3G10986 85 / 3e-20 Protein of unknown function (DUF567) (.1) AT1G80120 75 / 1e-16 Protein of unknown function (DUF567) (.1) AT2G30270 62 / 4e-12 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002477 [exp] 450 / 1e-163 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 396 / 2e-142 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 348 / 2e-123 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 290 / 2e-100 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 283 / 2e-97 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 273 / 1e-93 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 251 / 8e-85 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 249 / 3e-84 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 240 / 6e-81 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 305 / 2e-106 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 301 / 5e-105 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 301 / 1e-104 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 271 / 4e-93 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 267 / 1e-91 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 222 / 1e-73 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 218 / 6e-72 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 216 / 2e-71 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 215 / 5e-71 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 201 / 3e-65 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10001255 pacid=23166959 polypeptide=Lus10001255 locus=Lus10001255.g ID=Lus10001255.BGIv1.0 annot-version=v1.0 ATGGCCGGCGCCGGTCAAACCAGTAACCCGATCCCGGCAATGACGGTGTATCTCCCCCTGGAGCATCCCGCAGTGGTGGTCAGCCCGTATTTCTTAGCTC AATACCCTGTCGATCTAACCGTGGCGACCAAGCTGATGACATTGGGTGAAAACGATTTCACCGTCAAGGACGTCAACGGTACGATCATCTTCCGGATCAA GAGCAAGCTCATGAGCCTCCACGATCGCCGCAAGCTCATCGATGCCAATAACAACGTCCTCGTCTCCATGTCACAAAAGCTGATGACAGCTCACCGGAGA TGGAAGGCGTTCCGCGGAGACAGTAAAGACGACAAGGACTTGCTGTTCACGGTGAGGAAATCGTCTGTGCTGCAGCTGAAGACTGAGCTAGCGGTGTTCT TGGCTGGGAATTCGAAAGAAGAAGTGCCTGATTTCAGGGTGAAGGGGAGTTTTCATGAGAGCTCCTGCGTTGTGTATCTGGGAAACACCAACAAGATCAT TGCTCAGATGTACAGAGGGCATAGTATGGCGACGATGCTGTTCGAGGCGGACAATTTCAGAGTTACGATCTACCCAAATGTTGATTACGCATTCATTGTC TCTCTTGTGGTGATCCTTGACGAGATCAACGCTGACCGCAGCGGCGAAGACTAA
AA sequence Show only first row Show all	>Lus10001255 pacid=23166959 polypeptide=Lus10001255 locus=Lus10001255.g ID=Lus10001255.BGIv1.0 annot-version=v1.0 MAGAGQTSNPIPAMTVYLPLEHPAVVVSPYFLAQYPVDLTVATKLMTLGENDFTVKDVNGTIIFRIKSKLMSLHDRRKLIDANNNVLVSMSQKLMTAHRR WKAFRGDSKDDKDLLFTVRKSSVLQLKTELAVFLAGNSKEEVPDFRVKGSFHESSCVVYLGNTNKIIAQMYRGHSMATMLFEADNFRVTIYPNVDYAFIV SLVVILDEINADRSGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10001255 [exp]	0	1
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	2.4	0.8481
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	5.3	0.8739
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	6.6	0.8694
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	8.9	0.8349
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	9.9	0.8591
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	12.6	0.8543
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	13.4	0.8511
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	16.0	0.8403
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10012895 [exp]	16.6	0.8046
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	17.0	0.8254

Compare expression of checked genes

Lus10001255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.