Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38420 403 / 9e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 168 / 2e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 157 / 9e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 155 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 152 / 3e-39 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 148 / 2e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 147 / 1e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12775 142 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 142 / 5e-36 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16010 139 / 5e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002476 [exp] 850 / 0 AT2G38420 363 / 4e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019697 [exp] 469 / 5e-165 AT2G38420 181 / 5e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 148 / 5e-38 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 147 / 1e-37 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 142 / 2e-36 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038974 [exp] 142 / 9e-36 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 141 / 2e-35 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012068 [exp] 140 / 3e-35 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 140 / 4e-35 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106400 [exp] 551 / 0 AT2G38420 428 / 1e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 165 / 5e-44 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 159 / 4e-42 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G121700 [exp] 157 / 4e-41 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G038300 [exp] 155 / 5e-41 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 155 / 6e-41 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 154 / 4e-40 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.013G047000 [exp] 152 / 7e-40 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 152 / 1e-39 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 152 / 2e-39 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001256 pacid=23166961 polypeptide=Lus10001256 locus=Lus10001256.g ID=Lus10001256.BGIv1.0 annot-version=v1.0 ATGGTGAGGCTTCGCCCTTCTTCTCTAAAACCCACCAGCATTTTCCTTCGTAAACACAGAAAATGGCCACATTCTCCGTACAAAACCCAATGGCACCTAT CTTTCAACCAAGTACTCGCGATGCAATCTCTGAAACAACAAGCGGCCGCCGCCGCCGCAGCGTCACATCCCACACCCTCCTCCTCTGGCAACCTCCTCTC ATCTCTGATTCAATCCTTCAGCATCTACAACTGCCACCCAACTCCACAAGCTTATCACTTTATCCTCAAAACCATGGCCAAAACCTCCCAGCTCCACCAA ATCCCTCCACTCCTCGACCACCTGGAAAAAACCGAGCAGTTCGAAACCCCGGAGCTCATCCTCGCCGATCTCATCAAAATCTACTGCGAATCGAATCAAA TCGAGAAAGCCGTCGACGTCTTCTTCAGGATACCAAATTTCAGGTGCGCTCCTACTGCAATTTCTCTCAACACTCTGCTTGGTTTCCTCTGTAGAACAAA ATCAGGGCTCAAGATGGTTCCAGAAGTTCTGCTTAAGAGTCGAGAGCTGAACGTCCGTGTGGAGGAATCGAGCTTCCGGATACTGATCACCGCTCTCTGT AGAGTTAATCGGGTCAGCCACGCGATTGAGATGTTCCACCGCATGATCGAAGACGGATTCGTCGTCGGAGTCGGAGAAGAGATATGTTCTTTCTTGCTAT CGTCGCTTTGTGAACAGATGGATGTTTTAAGTGCCGGTGTAATTGGATTCTTCGGGGAGCTGAGAAAGCTTGGGTTTGTTCCAGGGTTGATAGACTACAC CAATGTGATTAGGTTCTTGGTTAGAGAAGGAGACGGAATGGAAGCGTTGAATGTTCTGAATCAGGTGAAATCAGACGGGATCAAGCCTGATATAGTCTGC TACAATTTGGTTCTGAAAGGGTTAGTCTTCATCCAGGAGTTTGAATTAGCAGACAACATGTTCGACGAATTGCTTCTGTACGGATTGGTCCCTGATATTC GTACTTACAATATCTACATAGACGGATTGTGCAAGCAAGGCAAGATGGAAAGTGGAATCAAGATGGTTGAATTAATGCAGCAACTGGGATGCAAGCCTGA TGTTGCTACCTACAATACTTTACTGTCTGCGCTAAGTAAAGACGGAAACTTTGGTGGTGCAAGGGAGCTGGTGAGGGAGATGGGTAAGAAGGGAATCAAA TGGAATACAGAGACGTATGCGATCATGATTGATCTGTTGAGTAGGTGTGGAGAAATGGTGGAAGCTTGTGGTTTAGTGGAGGAAGCATTGGAGAAAGGGC TGTTGGATGATGTTGTGGCTGCTGAGAATGTGGTTTGTGGGTTGTGCAGAAGGGGAATGATGGATGATGCTGTGGGATTGGTTGTTAAGATGGTGGAAAG AAATGTTGGTCCTGGAGGTGGAGCATGGGAGGCGATCCTTTTGGGGTTGGGGTTCAAGGATGAATGTTCAGGAACTAGGTTTGGTGGATTGTTGCTGGAT TTGCAGAGTGCAGACACAGTTCAGTGTGAAGATTGA
AA sequence Show only first row Show all	>Lus10001256 pacid=23166961 polypeptide=Lus10001256 locus=Lus10001256.g ID=Lus10001256.BGIv1.0 annot-version=v1.0 MVRLRPSSLKPTSIFLRKHRKWPHSPYKTQWHLSFNQVLAMQSLKQQAAAAAAASHPTPSSSGNLLSSLIQSFSIYNCHPTPQAYHFILKTMAKTSQLHQ IPPLLDHLEKTEQFETPELILADLIKIYCESNQIEKAVDVFFRIPNFRCAPTAISLNTLLGFLCRTKSGLKMVPEVLLKSRELNVRVEESSFRILITALC RVNRVSHAIEMFHRMIEDGFVVGVGEEICSFLLSSLCEQMDVLSAGVIGFFGELRKLGFVPGLIDYTNVIRFLVREGDGMEALNVLNQVKSDGIKPDIVC YNLVLKGLVFIQEFELADNMFDELLLYGLVPDIRTYNIYIDGLCKQGKMESGIKMVELMQQLGCKPDVATYNTLLSALSKDGNFGGARELVREMGKKGIK WNTETYAIMIDLLSRCGEMVEACGLVEEALEKGLLDDVVAAENVVCGLCRRGMMDDAVGLVVKMVERNVGPGGGAWEAILLGLGFKDECSGTRFGGLLLD LQSADTVQCED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10001256 [exp]	0	1
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10002369 [exp]	76.2	0.5983
AT4G14600			Target SNARE coiled-coil domai...		Lus10041130 [exp]	79.4	0.6127
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	92.2	0.6040
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10030677 [exp]	94.5	0.5892
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10042399 [exp]	95.0	0.5953
					Lus10013473 [exp]	107.5	0.5842
AT3G62370			heme binding (.1)		Lus10011771 [exp]	148.5	0.5357
AT3G02100			UDP-Glycosyltransferase superf...		Lus10040533 [exp]	162.9	0.5706
					Lus10030050 [exp]	174.9	0.5348
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10004370 [exp]	177.8	0.5611

Compare expression of checked genes

Lus10001256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.