Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56190 358 / 4e-125 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 207 / 2e-64 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012211 [exp] 498 / 1e-169 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3) Lus10002410 [exp] 399 / 7e-141 AT3G56190 428 / 1e-152 alpha-soluble NSF attachment protein 2 (.1.2) Lus10032835 [exp] 379 / 4e-132 AT3G56190 385 / 6e-135 alpha-soluble NSF attachment protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129900 [exp] 424 / 4e-151 AT3G56190 359 / 2e-125 alpha-soluble NSF attachment protein 2 (.1.2) Potri.008G075400 [exp] 390 / 9e-138 AT3G56190 360 / 6e-126 alpha-soluble NSF attachment protein 2 (.1.2) Potri.010G181900 [exp] 389 / 5e-137 AT3G56190 366 / 3e-128 alpha-soluble NSF attachment protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02071 [flax] [poplar] NSF Aromatic-di-Alanine (AdAR) repeat
Representative CDS sequence Show only first row Show all	>Lus10001258 pacid=23166963 polypeptide=Lus10001258 locus=Lus10001258.g ID=Lus10001258.BGIv1.0 annot-version=v1.0 ATGGGAGATCAAATAGCCAAGGGAGAAGAATACGAGAAGAAAGCGGAGAAGAAGATCAGCGGATGGGGATTGTTTAGCTCCGGTTCTAAGTACGAAGATG CCGCTGAGTTGTATGCTAAATCCGCCAACAGTTTCAAGCTCGCCAAATCATGGGAGAGAGCTGGTTCTGTTTACGTTAAAGTCTCCAATTGTCATCTCAA GTCCGATAGCGATCATGAAGCTGCCAGTGCTCTTGTGGATGCAGCGATTTGCTACAAGAAATCGTCGACTAAAGGCGCTATATCATGTCTGGAGCAAGCA GTAGATATTTATCTGAACATGGGAAGGTATAACATGGCTGCTAAGAATTGCAAGGAAATTGGGGAGTTATATGAGCAAGAACAGAACATGGAGAAGGCTA TAACGTATCTTGAGCGGGCAGCTGACTATTATGAACATCAAGATTCAAGCTCATCCGCTAACCAGTGCAAACAGAAAGTTGCACAATTTTGTGCTCAGCG TGAACAGTATCAGAAAGCAATCCAGGTATATGAAGAGATAGCTAGATACTCACTCAACAGCAACTTGCTCAAGTACGGTGTAAGAGGACATCTTCTCAAT GCTGGTCTTTGCCAGCTCTGTAGAGGGGACGTTGTAGCCATAACCAATGCATTGGACCGATACGAGGACATGGACCCAGCTTTCTCAAGAACTCGCGAGT ACAGATTCTTATCAGATTTGGCCACTGCAATTGACGAGGAGGATGTCGAGAAGTTTACAGGCATCGTAAAAGAATTCGACAGTATCAGCAAACTGGATTC TTGGAAGGTGAACCTGCTGTTGAAGGTGAAGCAAAGTTTGAAGGACAAGGAACTTGAAGAGGATGATTTGACCTAA
AA sequence Show only first row Show all	>Lus10001258 pacid=23166963 polypeptide=Lus10001258 locus=Lus10001258.g ID=Lus10001258.BGIv1.0 annot-version=v1.0 MGDQIAKGEEYEKKAEKKISGWGLFSSGSKYEDAAELYAKSANSFKLAKSWERAGSVYVKVSNCHLKSDSDHEAASALVDAAICYKKSSTKGAISCLEQA VDIYLNMGRYNMAAKNCKEIGELYEQEQNMEKAITYLERAADYYEHQDSSSSANQCKQKVAQFCAQREQYQKAIQVYEEIARYSLNSNLLKYGVRGHLLN AGLCQLCRGDVVAITNALDRYEDMDPAFSRTREYRFLSDLATAIDEEDVEKFTGIVKEFDSISKLDSWKVNLLLKVKQSLKDKELEEDDLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	0	1
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	1.7	0.8874
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	1.7	0.8582
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	2.8	0.8687
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	5.1	0.8149
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	5.2	0.8278
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	6.3	0.8497
					Lus10035698 [exp]	7.9	0.7475
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	8.9	0.8293
AT5G64460			Phosphoglycerate mutase family...		Lus10020467 [exp]	10.1	0.7758
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10028497 [exp]	11.4	0.7860

Compare expression of checked genes

Lus10001258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.