Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08840 1063 / 0 D-alanine--D-alanine ligase family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012211 [exp] 886 / 0 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106000 [exp] 1230 / 0 AT3G08840 1248 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF07478 [flax] [poplar] Dala_Dala_lig_C D-ala D-ala ligase C-terminus CL0483 [flax] [poplar] PreATP-grasp PF01820 [flax] [poplar] Dala_Dala_lig_N D-ala D-ala ligase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10001259 pacid=23166952 polypeptide=Lus10001259 locus=Lus10001259.g ID=Lus10001259.BGIv1.0 annot-version=v1.0 ATGGAGTCGGTTACTTCTTCTGCCTCTAAGCTCTCCGTACTGTGCTCCGATCAGCCTAGTTTTGTTGCTCCGAGGTCAAATTCGAGTCAACCCAACTTCT TGAACTTGAACTGTAAGCTGAAGTTTGATTCTTTGTCCGCTCACGCGCGATCCAAGGCTCCACGCGCCACCGCAGAGGTAGCGGCGGGCGATGTGATCGT GAAGGGGGAAGAGAGTAGGAGGGTCCTGACGGTGGGATTGGTATGCGGTGGACCATCGGCTGAGCGTGGGATTTCTCTTAATTCCGTCAGATCAGTTCTT GATCATATACAGGGAGACCATCTGCAAGTGAACTGCTACTACATTGACTTTGATCTCAGTGCCTTTGCTATATCCCCTGCCCAGGTATACTCAAATACCC CTGCAGATTTCGACTTTAAGCTTGAAAGTCTCGCCTGGCGTTTTTCGTCTCTGTCCGAGTTCGCGGAGCACCTTGCTGAATCTGTTGACATAGTGTTCCC TGTGATTCATGGTAAATTCGGCGAAGATGGTGGCATACAGGAGCTGTTGGAGAAGCACAATATCCCCTTTGTTGGTACAGGATCGAGTGAGTGTCGTCGT GCATTTGACAAGTATGAAGCCTCCTTGGAACTCAGCAAGCAAGGGTTCATTACTGTACCTAGTATTTTAGTTCAGGGAGCTGAAGCGGATGAATCCGAGC TATATAACTGGTTTACAAGTAACCAGCTGGACACCAACTCTGGGAAAGTGGTCGTGAAACCCGTCAGAGCCGGATCAAGCATTGGTGTATCGGTTGCTTA CGGTGTTGCTAATGCTCTAAAGAATGCAAAGGATGTCATATTAGAGGGGATAGACGACAAAGTCATCGTGGAAATCTTTCTCGAAGGAGGAAGCGAATTC ACTGCTATTATCCTCGATGTAGGTTCCGGAAGTGACTGTCAACCTGTAGTTCTAATCCCATCAGAGGTAGAGCTTCATTTCAGTGAAAAGGACGCCATTT TCAATTACAGAAGGAAGTACCTTCCAACTCGACAGGTGTCCTATCATACTCCCCCACGTTTTCCTCTTGAAGTAATAACAAGTATCCGTGAAGGAGCATC TCTACTCTTCCGACAACTTGGCTTGCGTGATTTTGCTCGAATCGATGGGTGGTTTCTGCCCTCGTCCACAAACTCATTCTCTGATGCTGATGGAAAGTTC GGAAAGTCTGATTTCGGCACATTGTTATTTACAGATATTAACCTGATTAGTGGAATGGAGCAAACAAGCTTTTTATTCCAGCAAGCGTCAAAGGTTGGAT TCTCGCATTCAAACATTCTGCGGAGCATCATTTACCACGCATCTTCAAGGTTTCCCAATCTCGAACCATTTGTTAATACGCCTGGTGATCTGCCTAGAAG ATCAAAACCCATACAGCCTGCTGAAGCTCTAAATGGAAAAGGTGTACGCAAAGTCTTTGTCATATTCGGAGGAGATTCATCGGAGCGTCAAGTGTCTGTG ATGAGTGCAACAAACGTTTGGCTTAACTTGCAAGCCTTTTCTGATGTTGAAGTGATCCCTTGTCTGCTTGCACCCTCGAATGATCAGAGTGCTGATGCTA GATCAAGGACTGTTTGGAAATTGCCTTACTCTCTTGTCCTGAGACACACTGTAGAGGAAGTTCTCGACGCCTGCTTCGAGGCAACTGACCCGGCTAGAGC TTCTTTGACATCACTGCAGGCTGAAGGAATTCCATATACAGGTCCTGGGATATCAGCGTCAAAGATTTGCATGGATAAAGTGGCTACATCTTTGGCTGTT AGTCATCTTTCAGATTCTGGAGTTCTCACCATAAGCAAAGATGTTAGAACAAAAGAGGATTTGCTGAAGTATCCCTCGTCGAAGATTTGGAACGAGTTGA CCTCAAAGCTTCAGTGTGGAACACTATGTGTCAAACCAGCTAGAGATGGATGCTCAACTGGTGTAGCTAGAATACGTTGTGCAGAGGATCTTGCAGTTTA TGTAAAAGCATTGGAGGAATGCCTTCTACGGATTCCACCAAACAGTTTCTCAAAAGCACATGGAATGATTGAGATGCCAAACCCACCTCCAGAGCACTTG ATCTTCGAGCCATTTATCGAGACAGATGAGATCATCGTCTCGTCGAAATCAGCAGATGGGCTATTGTGGGAAGGGCAGAGCCGCTGGGTCGAAATAACAG TTGGCGTTGTGGGGAAACTGGGTTGCATGAAGTCACTTACTCCAAGCATTACTGTTAAGGAAGGTGGCGACATTTTATCACTGGAAGAGAAATTTCAAGG TGGAACCGGCATCAATCTTACTCCTCCACCACCATCGATCGTCAGTGTGGAGGCACTGGAGAAATGCAAACACCGGATCGAGCTGATAGCAAACACGCTG AAGCTGGAAGGGTTTTCCAGAATTGATGCTTTTCTCAATGTCGATAATGGAGAGGTGTTGGTTATAGAGGTGAACACAGTGCCTGGAATGACTCCTTCAA CTGTACTGATTCATCAGGCCTTGGCAGAGGAGCCTCCAATGTACCCTCATGTGTTCTTCCGCAGGTTGCTTGATTTGGCTTCTGAAAGAATCATTTAG
AA sequence Show only first row Show all	>Lus10001259 pacid=23166952 polypeptide=Lus10001259 locus=Lus10001259.g ID=Lus10001259.BGIv1.0 annot-version=v1.0 MESVTSSASKLSVLCSDQPSFVAPRSNSSQPNFLNLNCKLKFDSLSAHARSKAPRATAEVAAGDVIVKGEESRRVLTVGLVCGGPSAERGISLNSVRSVL DHIQGDHLQVNCYYIDFDLSAFAISPAQVYSNTPADFDFKLESLAWRFSSLSEFAEHLAESVDIVFPVIHGKFGEDGGIQELLEKHNIPFVGTGSSECRR AFDKYEASLELSKQGFITVPSILVQGAEADESELYNWFTSNQLDTNSGKVVVKPVRAGSSIGVSVAYGVANALKNAKDVILEGIDDKVIVEIFLEGGSEF TAIILDVGSGSDCQPVVLIPSEVELHFSEKDAIFNYRRKYLPTRQVSYHTPPRFPLEVITSIREGASLLFRQLGLRDFARIDGWFLPSSTNSFSDADGKF GKSDFGTLLFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIYHASSRFPNLEPFVNTPGDLPRRSKPIQPAEALNGKGVRKVFVIFGGDSSERQVSV MSATNVWLNLQAFSDVEVIPCLLAPSNDQSADARSRTVWKLPYSLVLRHTVEEVLDACFEATDPARASLTSLQAEGIPYTGPGISASKICMDKVATSLAV SHLSDSGVLTISKDVRTKEDLLKYPSSKIWNELTSKLQCGTLCVKPARDGCSTGVARIRCAEDLAVYVKALEECLLRIPPNSFSKAHGMIEMPNPPPEHL IFEPFIETDEIIVSSKSADGLLWEGQSRWVEITVGVVGKLGCMKSLTPSITVKEGGDILSLEEKFQGGTGINLTPPPPSIVSVEALEKCKHRIELIANTL KLEGFSRIDAFLNVDNGEVLVIEVNTVPGMTPSTVLIHQALAEEPPMYPHVFFRRLLDLASERII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	0	1
AT3G28410			F-box/RNI-like superfamily pro...		Lus10020748 [exp]	4.0	0.8582
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	4.5	0.8865
AT5G32440			Ubiquitin system component Cue...		Lus10039987 [exp]	9.5	0.8644
AT1G71980			Protease-associated (PA) RING/...		Lus10014823 [exp]	9.9	0.8684
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	11.2	0.8852
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	11.3	0.8873
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	12.0	0.8627
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000531 [exp]	12.6	0.8231
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	16.0	0.8653
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	21.2	0.8695

Compare expression of checked genes

Lus10001259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.