Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05350 580 / 0 PLAC8 family protein (.1) AT3G10980 571 / 0 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT1G11380 52 / 5e-07 PLAC8 family protein (.1) AT1G52200 44 / 7e-05 PLAC8 family protein (.1) AT2G40935 43 / 0.0002 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012212 [exp] 1071 / 0 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10017417 [exp] 555 / 0 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10010219 [exp] 525 / 0 AT3G10980 598 / 0.0 PLAC8 family protein (.1) Lus10018410 [exp] 65 / 2e-11 AT1G11380 270 / 1e-91 PLAC8 family protein (.1) Lus10002586 [exp] 64 / 4e-11 AT1G11380 273 / 1e-92 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129700 [exp] 667 / 0 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.010G182100 [exp] 579 / 0 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.008G075300 [exp] 514 / 2e-178 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.011G040100 [exp] 67 / 4e-12 AT1G11380 280 / 5e-95 PLAC8 family protein (.1) Potri.004G026700 [exp] 65 / 3e-11 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.006G024900 [exp] 45 / 4e-05 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11204 [flax] [poplar] DUF2985 Protein of unknown function (DUF2985) PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10001260 pacid=23166953 polypeptide=Lus10001260 locus=Lus10001260.g ID=Lus10001260.BGIv1.0 annot-version=v1.0 ATGGTTTCACATGACAAAGGAGTAGAAGACTGGTCTGAACTCAAGCTGGAACAGCCATCATCATCGGCAAATCCGTCTGATAACAACAAGTCCGTTGGCA GTAACAATGCAACTGTCCTCGACATATCAACTTCTAGGAAGAAACTTCTCAACAGCAATGAAACCTCTAGTTCAGGAAGGCTACACCACTTATCAAAAGT TGTCCCAAGTAGGCTACAGATACTGAAACTAACTTCCAGCACTGGTTTAAGTTCTCCATCAGCCAAGTTCAAGCGGATAGCCTTTGAAAGAGATTCAACC TCCTGTTCCGTGCCTTCCTCGGGCTTTCGAGAACGACTCCAACGAACCCTATCTCGCAAAATCCAATGGGACTCACTATGGACCATGTTCAAGACATGGG TAAAGAGTCCCTTGAACATGGTCTTACTTCTTTGGATAGTATGCGTCACAGTCTCCGGAGCTTTACTCTTCTTTGTAATGACAGGGATGCTAAACCGCGC CATACCTAGGAAATCGCAAAGGGATATCTGGTTCGAGGTCAACAACCAAATCCTTAACGCCTTGTTCACTCTTATGTGCTTGTATAATCATCCGAAGCGA TTCTACCATCTGGTACTCCTCTGTAGATGGAAGCCAAAGGACATAACTTCACTCAGGAATGCATACTGCAAAAACGGTACTTACAAACCAAATGAATGGG CTCACATGTTGGTTGTTATCTCATTTCTTCATTTGAACTGCTTTGCTCAGTATGCATTATGTGGCCTTAACTTGGGGTATAGAAGATCATCCAGACCAGC TATCGGAGTCGCGATTTGCCTCTCCGTTGCGATAGCTGCCCCAGCTATCGCAAGCCTCTACTGCATTGTCAGTCCTCTTGGCAAGGACTACGAGGACGAC AATGCAGTAGAACAGGATGACGACGAAGAATCCCAGACACGAGTCACTACCAACAGACAACGCTTGTCGATGGAGAGAAGGTTCTCCTTCGCAACCATCG ACGAAGAAAACACCCCAACATGGAGAGGTGGCCTGTTTGATATCTGGGACGACATATCAGGAGCGTACCTATCACTCTTCTGCAGCTTCTGCGTATTCGG ATGGAACATGGAGAGGCTCGGATTCGGGAACATGTACGTCCACATAGCCACATTCCTCCTCTTCTGTTCTGCACCCTTCTGGATCTTCAACCTGGCAGCT GTGAACATCGACAACGACACAGCTCGTAGCGCGATGGGGCTGGCCGGGGTGATCCTCTGCGTGTTTGGGATGCTCTACGGTGGGTTCTGGAGGATCCAGA TGAGGAAAAGGTTCAACCTTCCCGGCAATGAAGAGTGTTGTGGAAATCCTGAGGTTGCCGACTGTACACAGTGGCTGTTTTGCTGTTGGTGCTCATTAGC TCAGGAAGTTAGGACGGCTGATTTCTACGATGTTGTGGAGAACAAGTTCAGAATGAAACAGCAGCAGCAGCATAGGCTTTCACCTCTGTCTCGTGAAGGC AGAGTCGAGCCTGGATTCAGTCCATCAGCATCATCGTCTCCTGCTCCTCCGAATCACGTTTCGAGGTTGAATTACAGCACGGAGAGGCTGGTGTTTGAAA TCCAGCCTCAGGTTTCTCTACAGGATGTTATGGACCCACCAGTTTTGTCAGCAATTCGAAGAGATGATGATAAAACCCAGCTCCCAAAGTGA
AA sequence Show only first row Show all	>Lus10001260 pacid=23166953 polypeptide=Lus10001260 locus=Lus10001260.g ID=Lus10001260.BGIv1.0 annot-version=v1.0 MVSHDKGVEDWSELKLEQPSSSANPSDNNKSVGSNNATVLDISTSRKKLLNSNETSSSGRLHHLSKVVPSRLQILKLTSSTGLSSPSAKFKRIAFERDST SCSVPSSGFRERLQRTLSRKIQWDSLWTMFKTWVKSPLNMVLLLWIVCVTVSGALLFFVMTGMLNRAIPRKSQRDIWFEVNNQILNALFTLMCLYNHPKR FYHLVLLCRWKPKDITSLRNAYCKNGTYKPNEWAHMLVVISFLHLNCFAQYALCGLNLGYRRSSRPAIGVAICLSVAIAAPAIASLYCIVSPLGKDYEDD NAVEQDDDEESQTRVTTNRQRLSMERRFSFATIDEENTPTWRGGLFDIWDDISGAYLSLFCSFCVFGWNMERLGFGNMYVHIATFLLFCSAPFWIFNLAA VNIDNDTARSAMGLAGVILCVFGMLYGGFWRIQMRKRFNLPGNEECCGNPEVADCTQWLFCCWCSLAQEVRTADFYDVVENKFRMKQQQQHRLSPLSREG RVEPGFSPSASSSPAPPNHVSRLNYSTERLVFEIQPQVSLQDVMDPPVLSAIRRDDDKTQLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	0	1
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	3.0	0.9341
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	3.5	0.9327
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	3.5	0.9351
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	4.0	0.9219
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	9.2	0.9446
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	16.0	0.9071
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	18.7	0.8908
AT4G21920			unknown protein		Lus10006774 [exp]	19.1	0.9103
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	20.4	0.9273
AT5G58950			Protein kinase superfamily pro...		Lus10025442 [exp]	25.5	0.9030

Compare expression of checked genes

Lus10001260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.