Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01740 139 / 2e-41 Nuclear transport factor 2 (NTF2) family protein (.1) AT3G10985 69 / 6e-15 WI12, ATWI-12, SAG20 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022755 [exp] 196 / 7e-63 AT5G01740 135 / 5e-40 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10029439 [exp] 196 / 8e-63 AT5G01740 128 / 3e-37 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10017421 [exp] 118 / 9e-33 AT5G01740 115 / 2e-32 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10010223 [exp] 115 / 2e-29 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129600 [exp] 181 / 4e-58 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G129500 [exp] 171 / 3e-54 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.019G125900 [exp] 87 / 3e-21 AT3G10985 93 / 9e-25 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.013G153801 [exp] 84 / 2e-19 AT3G10985 88 / 3e-22 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.010G182200 [exp] 73 / 1e-16 AT3G10985 123 / 8e-38 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.008G075200 [exp] 72 / 4e-16 AT3G10985 131 / 5e-41 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF07107 [flax] [poplar] WI12 Wound-induced protein WI12
Representative CDS sequence Show only first row Show all	>Lus10001261 pacid=23166965 polypeptide=Lus10001261 locus=Lus10001261.g ID=Lus10001261.BGIv1.0 annot-version=v1.0 ATGTACTTCCCAAGAGAATTCCCACTTCCAGAAAAATTTATCGGTTCCTCCATCTCTTCCTTCCTCTCCAAGCTTACCTCCGGTGGCCTCCTCTTCCCCT CCGACAACAAACCATTATCTCCTTCTCCTCTCAACTCGCCCGATGACTCAACCCAAACCGACCGGATCAAACCCATCATCGCATTCCTCTACAAGGCACT ATCATCTCACGGCGCCGGACCTACCTCCGCCAACGTGGCAGCAACAACTGATGATGACGACGATGACTACCGCAAGGTCATAGGTAGTGACCTGGAGTGG TGGTTCCACGGCCCCCCAGGTTGCGACTACATGATGAGGATGCTGACTGGGCAATCCATGTCAGCAACCGCCGCCAACAATACTGGAAGAGTATTTCGAT TTGAGCCGAGGAGCATTGAAGTGGTCGGGGAGTGCGTGATTGCTGAAGGATGGGAAGGTGAGAAGGTGTACTGGGTCCACGTGTGGTCGGTGAGGAACGG AGTGATTACTCAGTTCAGGGAGTATTTTAACACGTGGCTGACTGTCCAAGACGTGACACCGACGGCGGCGATGACAACAGTGGCAGAGGAGGAGATTAGG AGTGTTCCATCGCCTGAGAGGGAGAAGATCACGCTGTGGAGGAGCCACCCTGGTGATCTTTTTAAGCGGTCTTTGCCTGGCCTTGTTCTTGCTATATGA
AA sequence Show only first row Show all	>Lus10001261 pacid=23166965 polypeptide=Lus10001261 locus=Lus10001261.g ID=Lus10001261.BGIv1.0 annot-version=v1.0 MYFPREFPLPEKFIGSSISSFLSKLTSGGLLFPSDNKPLSPSPLNSPDDSTQTDRIKPIIAFLYKALSSHGAGPTSANVAATTDDDDDDYRKVIGSDLEW WFHGPPGCDYMMRMLTGQSMSATAANNTGRVFRFEPRSIEVVGECVIAEGWEGEKVYWVHVWSVRNGVITQFREYFNTWLTVQDVTPTAAMTTVAEEEIR SVPSPEREKITLWRSHPGDLFKRSLPGLVLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	0	1
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10032765 [exp]	3.2	0.7544
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	3.5	0.8416
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Lus10007238 [exp]	4.5	0.6618
					Lus10001343 [exp]	4.7	0.8407
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	4.9	0.8369
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	5.2	0.7589
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	6.9	0.8363
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	7.7	0.8266
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	8.8	0.7999
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	8.8	0.8235

Compare expression of checked genes

Lus10001261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.