Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05360 135 / 6e-41 unknown protein AT2G38450 128 / 1e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012213 [exp] 256 / 1e-88 AT5G05360 138 / 2e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128700 [exp] 148 / 2e-46 AT2G38450 144 / 2e-45 unknown protein Potri.010G182400 [exp] 137 / 7e-42 AT2G38450 136 / 4e-42 unknown protein Potri.008G075000 [exp] 123 / 3e-37 AT2G38450 123 / 1e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10001262 pacid=23166950 polypeptide=Lus10001262 locus=Lus10001262.g ID=Lus10001262.BGIv1.0 annot-version=v1.0 ATGGGAAAATCGCCTGCCGCAATAGCCAAGCTGCCCAATCTCGTCTCCAATCTCGTAAACCAGTCGAAACCCACATCTCGATTCAGCCGATTCGTCGGAG CAGAGGAACAAGAGAAGTTGAGAAGCAGCAGGAAGAAGGCGGCGGCGATGGAGACCAGCAGCTCCGACGTTGACGGCGGGAGCAGCAGCGGCGGAAGCGT CCGAGTGCCGCTGTCGGAAGTGGTGACGGATTGCGTGAAGCGGTGGTTCAAGGACACCCTCAAGGAAGCTAAAGGTGGAGACATTAACATGCAGGTCTTG GTCAGTCAAATGTATTACAGCGGCTATGGCGTAACCCAGGACCCCCAAAAGGGGAAAGTATGGATGACAAGAGCAGCAAGGACTCGGTCATCAGTTTGGA AAGTCAGCGACAAACGTCCTGGTTATAATGCTAGTGATTCAGACTCAGATGAACTAAAGGGCAATTCTTGA
AA sequence Show only first row Show all	>Lus10001262 pacid=23166950 polypeptide=Lus10001262 locus=Lus10001262.g ID=Lus10001262.BGIv1.0 annot-version=v1.0 MGKSPAAIAKLPNLVSNLVNQSKPTSRFSRFVGAEEQEKLRSSRKKAAAMETSSSDVDGGSSSGGSVRVPLSEVVTDCVKRWFKDTLKEAKGGDINMQVL VSQMYYSGYGVTQDPQKGKVWMTRAARTRSSVWKVSDKRPGYNASDSDSDELKGNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38450			unknown protein		Lus10001262 [exp]	0	1
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	1.4	0.9339
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	2.8	0.9243
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10023430 [exp]	3.3	0.9163
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	5.8	0.9343
AT3G48140			B12D protein (.1)		Lus10004241 [exp]	6.5	0.9215
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	6.9	0.9318
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	9.2	0.9053
AT5G54850			unknown protein		Lus10011150 [exp]	9.7	0.9225
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	11.8	0.9093
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	11.8	0.9209

Compare expression of checked genes

Lus10001262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.