Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38460 558 / 0 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) AT5G03570 550 / 0 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) AT5G26820 66 / 4e-11 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012214 [exp] 731 / 0 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10029841 [exp] 55 / 1e-07 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10020698 [exp] 52 / 9e-07 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10031421 [exp] 50 / 3e-06 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10010912 [exp] 47 / 3e-05 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128500 [exp] 632 / 0 AT5G03570 588 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.016G128600 [exp] 624 / 0 AT5G03570 610 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.005G012900 [exp] 70 / 2e-12 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06963 [flax] [poplar] FPN1 Ferroportin1 (FPN1)
Representative CDS sequence Show only first row Show all	>Lus10001263 pacid=23166951 polypeptide=Lus10001263 locus=Lus10001263.g ID=Lus10001263.BGIv1.0 annot-version=v1.0 ATGGAGCCACCGTTGATATCCAACGACGACGAAGAACAATTCGAACCTTCTTCGTCCTCGTCTTCATCTTCTCAGCCTCTGCCAACTTCTCTCATCAGAA ACCTCTACGTCGCCCATTTCCTCGCCAGATGGGACGCTAGGATGTGGGAGTTCTCCGTCGGGCTGTACATGATCCATCTCTGGCCCGATTCGCTCATCCT GGCGGCGGTATACGGCGCCGTCGAATCCGCTTCCACCGCGCTCTTCGGCTCCCTCGTTGGCCAATGGATTGAGCGCCTCGCTTATGTCCAGATTCTTAGA ATTTGGTTGGTCACTCAGAATCTCTCCTTCTTAGTTGCTGGAACCACTGTAGTTGTCTTGCTGCTATCTTCAATTTTGAACTCCACAGCCTTCATCTCAC TTGTTACATTAGCCAATGTCTCCGGAGCCATTGGTGTGCTTTCTACACTTGCTGGCACCATCTTGATCGAAAGAGAATGGGTGGTGGTGATTTCAGAAGG GCATCCTCCGGAGGTGCTGACAAGTATGAATTCGACAATCAGACGTATCGATCTGAGCTGCAAGCTACTTGCACCGGTGGTATCCGGCTTCATCATCAGC TTCGTATCGATACAAGCATCAGCTATGGCTCTAGCTTGCTGGAACACTGTAGCTGTATGGCTTGAATATTGGCTCTTCATGTCTGTGTATAAAGGGGTTC CAGCTTTAAGGGAGAGAAATCAGAAGAGGGTTGCGAGATACTATCCCAGTGATGATGTCGCGGAAACCAGCTCCTCTAGCAGTACTGTACCCTTAATAGC TTCGGAAACAGTGAGCTCATCAGCAAATTCGCCGTTTTTTGGAGCTTGGAGAGTGTACTTAAGACAGAATGTTGTGCTCCCTGGTGTAGCTCTTTCTTTG CTGTACTTCACTGTCCTCAGCTTTGGCACCTTGATGACAGCAACCTTAGAATGGCAAGGCATTCCTGCTTATGTAATCGGGTTAGCTCGTGGCATAAGCG CCATCATCGGAATATCTGCTACTTTTGTCTATCCAGTCATGCAATCTCAGCTCTCAACTCTCAGAACAGGACTCTGGTCTGTTTGGTCTCAGTGGGCTTG CCTTCTTGTATGTGTTGGTGCAATATGGGTCCATAGCCAAACCCTATCAGCATACATGCTCATGGCTGGCGTCGCAACCTCTCGACTCGGATTATGGATG TTCGACTTATCCGTGATCCAGCAAATGCAGGATCATGTAGCTGACACTGATCGTTGCATAGTGGGAGGCGTACAGAACTCTCTGCAATCCGCTCTGAATC TGTTGGGTTACCTAATGGGAATAATCATCCCAAACCCACAGGATTTCTGGAAGCTGAGTTTGACATCAGTATTTGCAGTAACAGTAGCGGCCATCCTCTA TAGCATACACATCTACCGCGTTCGAAACCACCTGATTCATTTCGAAAAGCTGGTTATGCTGGCTAGATGGGCAATTAGGTCAGAAAATGCATAA
AA sequence Show only first row Show all	>Lus10001263 pacid=23166951 polypeptide=Lus10001263 locus=Lus10001263.g ID=Lus10001263.BGIv1.0 annot-version=v1.0 MEPPLISNDDEEQFEPSSSSSSSSQPLPTSLIRNLYVAHFLARWDARMWEFSVGLYMIHLWPDSLILAAVYGAVESASTALFGSLVGQWIERLAYVQILR IWLVTQNLSFLVAGTTVVVLLLSSILNSTAFISLVTLANVSGAIGVLSTLAGTILIEREWVVVISEGHPPEVLTSMNSTIRRIDLSCKLLAPVVSGFIIS FVSIQASAMALACWNTVAVWLEYWLFMSVYKGVPALRERNQKRVARYYPSDDVAETSSSSSTVPLIASETVSSSANSPFFGAWRVYLRQNVVLPGVALSL LYFTVLSFGTLMTATLEWQGIPAYVIGLARGISAIIGISATFVYPVMQSQLSTLRTGLWSVWSQWACLLVCVGAIWVHSQTLSAYMLMAGVATSRLGLWM FDLSVIQQMQDHVADTDRCIVGGVQNSLQSALNLLGYLMGIIIPNPQDFWKLSLTSVFAVTVAAILYSIHIYRVRNHLIHFEKLVMLARWAIRSENA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38460		FPN1, ATIREG1	FERROPORTIN 1, ARABIDOPSIS THA...		Lus10001263 [exp]	0	1
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	14.0	0.7450
AT5G58300			Leucine-rich repeat protein ki...		Lus10003891 [exp]	46.0	0.6426
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	69.5	0.6947
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	77.3	0.5874
AT3G45740			hydrolase family protein / HAD...		Lus10008416 [exp]	95.8	0.6576
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	114.4	0.6306
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	152.4	0.6248
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	162.5	0.6178

Compare expression of checked genes

Lus10001263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.