Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01720 707 / 0 RNI-like superfamily protein (.1) AT5G27920 346 / 4e-110 F-box family protein (.1) AT4G15475 146 / 6e-37 F-box/RNI-like superfamily protein (.1) AT5G25350 127 / 2e-30 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 112 / 2e-25 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 103 / 3e-23 RNI-like superfamily protein (.1) AT1G77000 86 / 7e-18 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 84 / 5e-17 SKP2A F-box/RNI-like superfamily protein (.1) AT3G58530 81 / 3e-16 RNI-like superfamily protein (.1) AT1G80570 76 / 3e-14 RNI-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012214 [exp] 1072 / 0 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 264 / 8e-81 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012764 [exp] 157 / 9e-40 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 127 / 2e-30 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 126 / 5e-30 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 124 / 4e-29 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10030102 [exp] 122 / 7e-29 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 122 / 8e-29 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 119 / 1e-28 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128400 [exp] 950 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 937 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 732 / 0 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 385 / 4e-125 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 360 / 2e-115 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 128 / 9e-31 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 119 / 6e-28 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 115 / 2e-26 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 103 / 1e-23 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 99 / 3e-21 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001264 pacid=23166948 polypeptide=Lus10001264 locus=Lus10001264.g ID=Lus10001264.BGIv1.0 annot-version=v1.0 ATGAAGCGCCACCACCACCACAACCAAGCAAACTACTTCGATCTCCTCTCCGACGAGATCGTCTTCGCCATCCTCGACTGCCTCGGCTCATCCAATCCAC TCGACAAGAAGTCCTTCTCCTTAGTCTGCAGATCGTTCTACCTAACTGAGTCCAGGCACCGCCGGACTGTGAAGCCCCTCCGCCACGAGCACCTCCCGAG GATTCTCTCCCGCTACCGCAGCGTGTCGTCTCTCGATCTCTCGCTCTGTCCGCGGATAAGCGATGGCTCGCTCTCTGTGATCGCTGCCAGCTGCGGGGAG ACGCTCAGGTTGATCGACCTATCGCGGTCGAGGTTTTTCTCTTATGCTGGATTGATGAGCCTGGCTGTGAACTGTAGGAATCTGGTGGAGATCGATTTGT CCAATGCGACGGAGCTCAGGGACGCGGCGGCGTCCGCTGTGGCGGAGGCTAAGAATTTGGAGAAGCTGTGGTTGGGGAGGTGTAAGTTGATTACGGATAT GGGAGTTGGTTGTATCGCTGTTGGTTGTAAGAAGTTGAGGCTGATTAGCTTGAAGTGGTGCTTAGGTGTTACTGATTTGGGCGTTGGATTGATCGCTGTT AAGTGCAAGGAGCTTCGGAGTTTGGATCTCTCTTACTTGCCGATTACAAATAAATGTTTACCAGCCATTTTGAAACTACAATACCTTGAAGATCTGATTG TAGAAGGATGCTTTGGCATTGACGATGAAGGGCTTGCTGCGGCCAAACATGGCTGCAAATCACTCAAGATGCTTGATATTTCTAGCTGTCAGACCATTAG CCATGTTGGTCTATCTTCTTTAATCAGTGGCGCTGGGAGTCTACAGCAGCTCACTTTAGCTTATGGATCTCCAGTAACTCTCTCTCATGCTAATAGCTTG AAGATGCTTTCCTTGCTGCAATCTCTCAAACTAGATGGTTGTTTGATTACCTCTGATGGGTTAAAGGCCCTTGGAGACTTGCGTACATCATTAACAGAGC TGAGTCTAAGCAAGTGTATGGGAGTGACGGATGAAGGCCTTTCATTCCTTGTGACAAAGCATAGAGATTTGAAGAAACTCGATATTACTTGTTGCCGTAG GATAACTGATGTTTCAATCGCCAATATTGCGAACACATGTACCAATCTAACTTCTCTCAAAATGGAGTCATGTACTCTGGTTCCTAGAGAAGCATTCGTC TTGATTGGTCAAAGATGTCATTTCCTTGAAGAGCTCGATCTAACCGATAACGAGATCGATGATGAAGGTCTGAAGTCCATTTCAAGGTGTTACAGACTCT CTAGCTTGAAATTGGGAATTTGCCTGAATATAAGTGATTACGGACTGTCTCATATCGGGATTCACTGCTCGAAGCTCACTGAGCTTGACCTCTACAGGTC AGCTGGAATTGGCGACTCAGGAATTTTAGCGATTGCTTCTGGTTGTTCCGACCTCGAGATGATCAACATGTCGTATTGCAAGGACATCACAGACAGTTCC CTCATATCTCTATCAAAATGCTTACGACTTAATACATTCGAGAGCAGAGGATGTCCTTTGATCACATCTTTAGGACTAGCAGCTATAGCTGTTGGATGCA GGCAACTCAGCAAGCTAGACGTAAAGAAGTGCCACAGCATTGACGACGCAGGGATGCTTCCCCTCGCTCACTTCTCTCAAAGCCTCCGGCAGATTATCTT GTCGTATACTTCAGTCACCGATGTAGGGCTGCTTTCACTTGCCAGCATCAGCTGCCTGCAAAGCATGACTGTCTTACACTTGAACGGCTTAACTGCCAGT GGATTGACAGCTGCCTTGCTGGCCTGTGGCGGACTCGTAAAAGTGAAACTCCACGCTTCTTTCAAACAACTGCTTCCCCCACTTCTTTTCGAACATTTGG AAGCTCGAGGGTGCTCGTTCGAATGGCGCGATAAAGAGTTTCAGGCTGAACTAGATCCACAGTGCTGGAAGCTTCAATTGGAGGATGTGGCTCATTAG
AA sequence Show only first row Show all	>Lus10001264 pacid=23166948 polypeptide=Lus10001264 locus=Lus10001264.g ID=Lus10001264.BGIv1.0 annot-version=v1.0 MKRHHHHNQANYFDLLSDEIVFAILDCLGSSNPLDKKSFSLVCRSFYLTESRHRRTVKPLRHEHLPRILSRYRSVSSLDLSLCPRISDGSLSVIAASCGE TLRLIDLSRSRFFSYAGLMSLAVNCRNLVEIDLSNATELRDAAASAVAEAKNLEKLWLGRCKLITDMGVGCIAVGCKKLRLISLKWCLGVTDLGVGLIAV KCKELRSLDLSYLPITNKCLPAILKLQYLEDLIVEGCFGIDDEGLAAAKHGCKSLKMLDISSCQTISHVGLSSLISGAGSLQQLTLAYGSPVTLSHANSL KMLSLLQSLKLDGCLITSDGLKALGDLRTSLTELSLSKCMGVTDEGLSFLVTKHRDLKKLDITCCRRITDVSIANIANTCTNLTSLKMESCTLVPREAFV LIGQRCHFLEELDLTDNEIDDEGLKSISRCYRLSSLKLGICLNISDYGLSHIGIHCSKLTELDLYRSAGIGDSGILAIASGCSDLEMINMSYCKDITDSS LISLSKCLRLNTFESRGCPLITSLGLAAIAVGCRQLSKLDVKKCHSIDDAGMLPLAHFSQSLRQIILSYTSVTDVGLLSLASISCLQSMTVLHLNGLTAS GLTAALLACGGLVKVKLHASFKQLLPPLLFEHLEARGCSFEWRDKEFQAELDPQCWKLQLEDVAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01720			RNI-like superfamily protein (...		Lus10001264 [exp]	0	1
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	1.0	0.8334
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	11.6	0.7783
AT5G36930			Disease resistance protein (TI...		Lus10037406 [exp]	31.4	0.8137
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10000043 [exp]	58.0	0.7557
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	105.6	0.7522
AT5G38260			Protein kinase superfamily pro...		Lus10025554 [exp]	112.2	0.7661
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	126.8	0.7633

Compare expression of checked genes

Lus10001264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.