Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 352 / 9e-116 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 274 / 2e-88 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G30250 252 / 7e-79 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G03340 255 / 1e-78 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26640 254 / 1e-78 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 254 / 2e-78 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G56270 248 / 2e-74 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 233 / 2e-69 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 224 / 1e-67 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G04880 194 / 6e-56 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012215 [exp] 738 / 0 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10042243 [exp] 344 / 4e-113 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10030424 [exp] 269 / 2e-84 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 265 / 4e-83 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10016595 [exp] 265 / 1e-81 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 256 / 6e-80 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10032580 [exp] 251 / 1e-78 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10000173 [exp] 249 / 1e-78 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 251 / 6e-78 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128300 [exp] 461 / 9e-158 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 407 / 6e-137 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 390 / 1e-129 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 372 / 9e-123 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 270 / 1e-84 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 261 / 6e-81 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 255 / 3e-78 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 251 / 1e-76 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.004G120800 [exp] 238 / 8e-72 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.014G164300 [exp] 212 / 2e-62 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10001265 pacid=23166949 polypeptide=Lus10001265 locus=Lus10001265.g ID=Lus10001265.BGIv1.0 annot-version=v1.0 ATGGACACCATCAACTGGGGAGCTTACAGTACCACCGATCACCATATGAACAGAAATGGAAACAACATTTCTGAAGCTGAAGCTCCGAAATTCAAGTCGT TCCCGCCACCTTCTTTGCCGCTCTCTCCTCCTCCTTTGTCTCCTTCTTCCTACTTCGCCTTCCCTCCTGGCTTAAGCCCCTCCGACCTCCTCGATTCCCC TGTTCTCTTCTCCTCTGCCACTAATCTTCTTCCGTCTCCGACCACCGGAGCTTTCGCCGGCCAGAGCTTCAATTGGAGGAACAATTTCTCCGATTCCTCC GCCGCCGGCGGAAATAAGCAGCAGAAGAGTAAAGACGAAACTAACCATTCCGATTTCTCTTCCCAGCCGCAAACCAGACCGAATTCCTCAACGGATTGGG GATTCAACAAGCAAGCAACGAACACTTCGTCAGCGGAGATGGTACCCAAATCGGAATTCGCCAGCTTTTCATCGGAAACGGCGCCGTATCGACCTGCCAA TAATCAGACTCAGACGGCTCATTACATGAGGGAGAGCAGGAGATCGGACGATGGGTACAACTGGAGGAAGTACGGCCAGAAGCAGGTGAAAGGGAGCGAG AATCCGAGGAGCTATTACAAGTGCACTTATCCCAACTGTCCGACGAAGAAGAAAGTAGAGAGGTCGTTGGATGGACAGATTACTGAGATTGTTTACAAAG GTAGTCATAACCATCCCAAGCCTCAGTCCACCAAGCAGCAGCAGTCTGTGCAGCCTTCTTCCATTGTAAGTGCGAATAGCGGTAGTCATGAGATTGGTGT TGATCATTTGTCGGGGACGGTACAGGATGATGTCTCGTCGATTACAATTGGTGGGGAGGATGAGTTTGATCAGAGCTCGCCGCTTAGCCATTCTGGTGGT GGTGGAGCTGATGGGGATGATAGTCAGGAACCTGATGCTAAAAGATGGAAGGGCCAGAATGAGAGTGAGAGCATGATGGGAAATGGGAGCAGAACAGTAA GAGAACCAAGGGTTGTGGTGCAGACAACAAGCGACATCGACATACTTGATGACGGATACAGGTGGAGGAAGTATGGACAGAAAGTCGTCAAAGGAAATCC CAATCCAAGGAGCTACTATAAATGCACATTCGTAGGATGTCCTGTCAGGAAACATGTGGAGAGAGCTTCACACGACCCGAGAGCTGTGATCACCACCTAC GAGGGGAAACACAACCACGACGTTCCTGCTGCGAGAGGTAGCGGATATGTCACCACGTCCAGACCGGTTGCGACGAATGTAAACAACAACCCTGCTCCAA TAAGGCCAGCTGTCATTGCTAACCATTCGAGCAACAACAACACAAACTACGGTCAGAACTCTATCAACACGACGAATTCAGGACCCTTCAATTTGGAGAT GCTGCAGAGTCAGGGGAGTTTCGGGTTCTCAGGTTTCGGTAGCAGGCAAGCAGCATCGACGAATTCGAATCCTTACATGAATCAGTCCGGCCAGTACTCC AACGTCGCCAAGGAAGAACCTAAGGAGGATACGTTCTTTGATTCACTGCTGAGTTGA
AA sequence Show only first row Show all	>Lus10001265 pacid=23166949 polypeptide=Lus10001265 locus=Lus10001265.g ID=Lus10001265.BGIv1.0 annot-version=v1.0 MDTINWGAYSTTDHHMNRNGNNISEAEAPKFKSFPPPSLPLSPPPLSPSSYFAFPPGLSPSDLLDSPVLFSSATNLLPSPTTGAFAGQSFNWRNNFSDSS AAGGNKQQKSKDETNHSDFSSQPQTRPNSSTDWGFNKQATNTSSAEMVPKSEFASFSSETAPYRPANNQTQTAHYMRESRRSDDGYNWRKYGQKQVKGSE NPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTKQQQSVQPSSIVSANSGSHEIGVDHLSGTVQDDVSSITIGGEDEFDQSSPLSHSGG GGADGDDSQEPDAKRWKGQNESESMMGNGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFVGCPVRKHVERASHDPRAVITTY EGKHNHDVPAARGSGYVTTSRPVATNVNNNPAPIRPAVIANHSSNNNTNYGQNSINTTNSGPFNLEMLQSQGSFGFSGFGSRQAASTNSNPYMNQSGQYS NVAKEEPKEDTFFDSLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	0	1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	1.0	0.9838
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	1.4	0.9635
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	2.4	0.9538
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	2.4	0.9277
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	3.5	0.9465
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	3.9	0.9442
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	5.2	0.9051
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	5.7	0.9158
AT4G36500			unknown protein		Lus10014291 [exp]	5.9	0.9206
AT1G30755			Protein of unknown function (D...		Lus10017260 [exp]	7.2	0.8893

Compare expression of checked genes

Lus10001265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.