Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01710 710 / 0 methyltransferases (.1) AT3G53400 120 / 3e-29 unknown protein AT5G03190 116 / 5e-28 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT1G24480 101 / 3e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 96 / 3e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G58120 79 / 9e-16 unknown protein AT2G16030 58 / 2e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012217 [exp] 959 / 0 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10014232 [exp] 753 / 0 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022682 [exp] 731 / 0 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10019932 [exp] 139 / 7e-36 AT3G53400 385 / 1e-130 unknown protein Lus10026502 [exp] 130 / 1e-32 AT3G53400 392 / 1e-133 unknown protein Lus10036941 [exp] 102 / 2e-24 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 101 / 4e-24 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 94 / 2e-21 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018506 [exp] 76 / 3e-15 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128100 [exp] 734 / 0 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 714 / 0 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 493 / 5e-172 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 152 / 1e-40 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 147 / 7e-39 AT3G53400 420 / 6e-144 unknown protein Potri.010G052100 [exp] 102 / 1e-24 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 98 / 7e-23 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G113200 [exp] 89 / 6e-19 AT1G58120 252 / 6e-80 unknown protein Potri.017G047700 [exp] 89 / 7e-19 AT1G58120 254 / 6e-81 unknown protein Potri.002G104500 [exp] 81 / 3e-16 AT1G58120 283 / 1e-91 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10001267 pacid=23166960 polypeptide=Lus10001267 locus=Lus10001267.g ID=Lus10001267.BGIv1.0 annot-version=v1.0 ATGGAGGGAAAGCCCAGCTTTCTACGGAACATCTTCACCCGGGTGCTCTTCTTCGGCGTCCTGCTCATCGTCGTCCGCTTCGCTTACATCGTCACCATCA CCGGCGAGTCCTGCAACCTCGGCAGCTTCTGCTTCTTCGCCTTGCCGGAGAATTTCAACTTTGTCATTCCTGGCGCCGGTGCCGGTGCCGGAGGATCTAA CAAAGCCGTCCGATCTCAGCAGAGTAATGCGGCGAGAAGCCAGCTGTACACCAGTAAAGACTGGATCAAATCAGTCCAGTTCTACTCCTCGATCTTCCAA GATCTGATCTCCGATGGATACCTATCTCCGACCTCCAAATCCTTATGCGTCGAGACGCCGCTCGGGCAGGAAGTCTTCGCTCTCAAAGAGATCGGAGTTG CCGACTCGATCGGCCTTTTCAAAAAGGCCTCCAAGCCTTTAGTCATCTCCAGCAAACTGAATCGCATTCCGTTCAAGGAGAACACTTTCGACTTCGTCTT CTCCGGTGGAGGCAGATACGATGCCGTCTTACGCCCCTTAGTTTTGGCGTCGGAGATTACAAGGACGCTGAAACCCGAAGGGTTTCTCGTCGTCCATGTC AGGGCAAACGATACATACAGTTTCGATTCTTTTCTTGATTTATTCAATTCTTGTAAATTGATTCGATCTCGCGATCTCGACAGCTCCGATTCGAAGCTTC CGTACATCAGAGAGATCGTTCTGCAAAAAACATACACTCAAATTCTTCGCCGCCGGGAGGAATCATCCGGAAGGTGCTCTGTTCCGGTGCATAAACTGGA GCTGGTTCGTGAAGCTGAGCCGTTGATTGAGACAGAGCCGAAGAAGCCGTGGATTACACTGAAGAGGAACATACAGAACATAAAGTATTTACCATCAATG GCTGACATAAGCTTCAAGAACAGGTACGTATATGTAGACGTCGGAGCTAGAAGCTACGGCTCCAGCATTGGAAGCTGGTTTAGGAAGCAGTATCCGAAGC AGAACAAGACCTTCGAAATCTATGCAATCGAGGCCGATAAGCATTTCCACGAAGAGTATAAGTTGAAGAAGAATGTTCACCTGCTGCCGTACGCTGCTTG GGTGAAGAACGAGACTTTGTCGTTCGAAATCAACCGCGATCCTGGCGAGCAGGTCAAGGATAAAGGGAGAGGCATGGGGAGGATTCAGCCAGTGACGGCT TCGACTAGCTTTGATGGCGTGGTTGATGAGATTCAAGGGTTCGATTTCGCGAAGTGGTTGCAGAGGACGGTGACTGAGAAGGACTTTGTGGTGATGAAGA TGGACGTGGAAGGGACAGAGTTCGATTTGATACCGAGGCTGGTTAAGACCGGGGCGATCTGTTTGATCGACGAAGTGTTTCTCGAGTGTCATTACAATAG GTGGCAGAGATGCTGCCCTGGTGAGAGGAGTCCCAAATACGAGAGGACGTATGAGCAGTGCTTGGATCTTTTCACTACTTTGAGAGAGAGTGGAGTTCTT GTTCATCAATGGTGGTGA
AA sequence Show only first row Show all	>Lus10001267 pacid=23166960 polypeptide=Lus10001267 locus=Lus10001267.g ID=Lus10001267.BGIv1.0 annot-version=v1.0 MEGKPSFLRNIFTRVLFFGVLLIVVRFAYIVTITGESCNLGSFCFFALPENFNFVIPGAGAGAGGSNKAVRSQQSNAARSQLYTSKDWIKSVQFYSSIFQ DLISDGYLSPTSKSLCVETPLGQEVFALKEIGVADSIGLFKKASKPLVISSKLNRIPFKENTFDFVFSGGGRYDAVLRPLVLASEITRTLKPEGFLVVHV RANDTYSFDSFLDLFNSCKLIRSRDLDSSDSKLPYIREIVLQKTYTQILRRREESSGRCSVPVHKLELVREAEPLIETEPKKPWITLKRNIQNIKYLPSM ADISFKNRYVYVDVGARSYGSSIGSWFRKQYPKQNKTFEIYAIEADKHFHEEYKLKKNVHLLPYAAWVKNETLSFEINRDPGEQVKDKGRGMGRIQPVTA STSFDGVVDEIQGFDFAKWLQRTVTEKDFVVMKMDVEGTEFDLIPRLVKTGAICLIDEVFLECHYNRWQRCCPGERSPKYERTYEQCLDLFTTLRESGVL VHQWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	0	1
AT5G42860			unknown protein		Lus10010231 [exp]	1.0	0.8947
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	1.4	0.8789
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	2.2	0.8399
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	3.9	0.8640
AT1G45688			unknown protein		Lus10010232 [exp]	7.3	0.8392
					Lus10026314 [exp]	7.5	0.8491
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	8.4	0.8332
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	9.2	0.7862
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	13.9	0.8231
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	14.7	0.7701

Compare expression of checked genes

Lus10001267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.