Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01700 359 / 1e-121 Protein phosphatase 2C family protein (.1.2) AT5G36250 353 / 2e-118 Protein phosphatase 2C family protein (.1) AT3G02750 341 / 5e-113 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 337 / 1e-111 Protein phosphatase 2C family protein (.1) AT1G79630 336 / 9e-111 Protein phosphatase 2C family protein (.1.2.3) AT4G03415 324 / 1e-106 Protein phosphatase 2C family protein (.1.2) AT1G03590 320 / 4e-105 Protein phosphatase 2C family protein (.1) AT5G27930 286 / 4e-93 Protein phosphatase 2C family protein (.1.2) AT3G16800 278 / 2e-90 Protein phosphatase 2C family protein (.1.2.3) AT3G05640 277 / 6e-90 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012218 [exp] 812 / 0 AT5G36250 353 / 3e-118 Protein phosphatase 2C family protein (.1) Lus10022683 [exp] 664 / 0 AT3G02750 352 / 9e-119 Protein phosphatase 2C family protein (.1.2.3) Lus10014231 [exp] 662 / 0 AT5G01700 360 / 1e-120 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 343 / 2e-113 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 341 / 1e-112 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 334 / 1e-110 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 332 / 6e-110 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 331 / 3e-109 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 330 / 7e-109 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105000 [exp] 537 / 0 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 526 / 0 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 370 / 4e-124 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 349 / 3e-116 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G144100 [exp] 339 / 2e-112 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G103100 [exp] 338 / 4e-112 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 333 / 1e-109 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 332 / 3e-109 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 305 / 1e-100 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 303 / 3e-100 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10001268 pacid=23166962 polypeptide=Lus10001268 locus=Lus10001268.g ID=Lus10001268.BGIv1.0 annot-version=v1.0 ATGGGAGCCTGTTGTAGCACAGAGTTCCATTTCGGACCCGAATCCGAGGACGCCGCCGCCACCGACCATAAGAACGACTACGACGACGGTGAGGGAAACG ATGGCGACGACGACGGGAATGTCTTCGTCGGTGACTACGGCGCCCGCGTCCGCCTCCACGGAAGTTCGAAATACATCGCCATGCACACCCAGCAGGGGAA AAAGGGAGTCAATCAGGACGCCATGACCGTGTGGGAGGAATTCGCGGGGGACAAATCGATGACGTTCTGTGGCGTTTTCGACGGCCATGGACCGTACGGT CATAAAGTGTCGAGACACGTTCGTGATAATCTGCCGTCGAAAATCTCCACCGGGATCAAATCCGAGCACCTCACTAGCAATTTGGATAGCTGCGATGTTA GCCATTGCAACGATGATGGTGGCAGCGATCATGAATCCTCGTTGAACGACGCGAAACGGTCTGGTCTTTTGAATTCATGGGAAAAGTGTTTGATGAAATG CTTCAAAGAGATGGATGAAGAACTCAGCCTTGATGCCAGCATCGATAGCTACTGCAGCGGCGCCACCGCGGTCTCCGTCATTAGAAAGGGGAGGCATTTG CTGGTGTCAAACTTGGGAGATTCAAGGGCGGTTCTTTGCCGGAAGGGAAACAAAAACCAGCTGATCCCAATCCAACTCACGGTGGATTTGAAACCGAATG TCCAAAGCGAAGCGGAGAGGATAAAGAAGAAGAACGGGAGAGTGTTTGCAATGGAGGAAGAACCTGAAATCTTCAGGATATGGATGCCTGATGAAGACTG TCCAGGTTTAGCCATGGCTAGAGCTTTCGGAGATTTCTGCCTTAAGGATTACGGCCTCATCTCAACTCCTCAGGTTTCCTACAGAAGGCTCACTAACAAC GACGAGTTCGTCGTCCTAGCCACCGATGGAATATGGGACGTGCTGACGAACGATGAGGTGATAAACATAGTGGCATCGGCGAGGCAGAGGTCGATGGCGG CCAAATTACTGATAAAATACGCGGTCCGGCTATGGAGAACGAGGCATCCGGGTTGCAGAATCGACGATTGCGCGGTGGTCTGCCTCTTCCTGAAGAGCAA GACGATCCTGACAAGGTCGTTCTCCGAGGTGAGCAGAGTGAGCGCGAACCACACTGAGTTGGCGGAGAATTTTTCGGAAGTGAGCAGAGCGAGCGTCCAC CACTCGGAGATAGCAGCGGTGCCGTTGAAATCAAGGACGGTGAAGCACCACCTCGGGCGTCCGCCGGCGGGACCGGATGAGGGGAGGTCGGAGTCGTTTG AGGTAGCGTCTGGATTGAGTCAGAGGAGAGGAGTGAAGTCAACGGAGCCTGTTTGA
AA sequence Show only first row Show all	>Lus10001268 pacid=23166962 polypeptide=Lus10001268 locus=Lus10001268.g ID=Lus10001268.BGIv1.0 annot-version=v1.0 MGACCSTEFHFGPESEDAAATDHKNDYDDGEGNDGDDDGNVFVGDYGARVRLHGSSKYIAMHTQQGKKGVNQDAMTVWEEFAGDKSMTFCGVFDGHGPYG HKVSRHVRDNLPSKISTGIKSEHLTSNLDSCDVSHCNDDGGSDHESSLNDAKRSGLLNSWEKCLMKCFKEMDEELSLDASIDSYCSGATAVSVIRKGRHL LVSNLGDSRAVLCRKGNKNQLIPIQLTVDLKPNVQSEAERIKKKNGRVFAMEEEPEIFRIWMPDEDCPGLAMARAFGDFCLKDYGLISTPQVSYRRLTNN DEFVVLATDGIWDVLTNDEVINIVASARQRSMAAKLLIKYAVRLWRTRHPGCRIDDCAVVCLFLKSKTILTRSFSEVSRVSANHTELAENFSEVSRASVH HSEIAAVPLKSRTVKHHLGRPPAGPDEGRSESFEVASGLSQRRGVKSTEPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01700			Protein phosphatase 2C family ...		Lus10001268 [exp]	0	1
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	6.8	0.7705
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10012552 [exp]	13.1	0.7398
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	21.0	0.7122
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	23.9	0.7091
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	25.3	0.7074
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	26.8	0.7324
					Lus10006164 [exp]	27.1	0.7060
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	29.0	0.7060
					Lus10001790 [exp]	30.7	0.7060
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10013957 [exp]	31.5	0.7026

Compare expression of checked genes

Lus10001268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.