Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51670 589 / 0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72160 328 / 2e-108 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 317 / 1e-101 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 312 / 2e-101 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22530 263 / 6e-81 PATL2 PATELLIN 2 (.1) AT1G72150 246 / 9e-76 PATL1 PATELLIN 1 (.1) AT4G39180 88 / 1e-18 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 86 / 5e-18 ATSFH12 SEC14-like 12 (.1) AT2G18180 86 / 1e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 83 / 8e-17 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012219 [exp] 691 / 0 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001542 [exp] 352 / 2e-117 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 339 / 5e-112 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009453 [exp] 301 / 6e-100 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031752 [exp] 289 / 4e-91 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001539 [exp] 277 / 1e-90 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10003552 [exp] 269 / 5e-85 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033895 [exp] 206 / 3e-59 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 186 / 1e-56 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127700 [exp] 649 / 0 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.001G461400 [exp] 348 / 1e-115 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G106000 [exp] 348 / 1e-114 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 347 / 4e-114 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 345 / 1e-113 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 339 / 5e-111 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 337 / 1e-110 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 337 / 4e-110 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 337 / 5e-110 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 262 / 5e-83 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10001269 pacid=23166954 polypeptide=Lus10001269 locus=Lus10001269.g ID=Lus10001269.BGIv1.0 annot-version=v1.0 ATGGATTCACTACCAGCTGCTGCAATACCACCACCACCACCACAAGACTCCACCTCCGTCGCCGCCGCTGCATCCCCGAAACCGCCGCCGTACAAGAAAA CCTTAGTGAACTCACTAATGGAAGCTGCCTCAACCCTCAAAACCCCATCTTTCAAAGAAGACAACTACCTAACCTCCAACCTCAAACCCACCGAGAAAAA AGCACTCCAAGACCTCAAAGACAAGCTCTCCGCCGCTTCCGCCGATGCCTCCGACGGCGTCATCGGCGCCACCATGTGGGGTATCGACCTCCTCAGCTCA ACAGACGAAAAAGCAACCGTCATCCTCTTGAAATTCCTCCGCGCCAGAGACTTCCGAGTGGCGGAATCGTTCCAGATGATTTCGAAATGCCTTTCATGGA GGAAAGAATTCGGCGCCGATTCCGTCGTGGAGGAGGATCTGGGGTTTAAAGAGCTGGAAGGAGTCGTTGCTTATATGCAAGGGTTTGACCGGGAAGGGCA TCCGGTTTGTTACAACGCGTACGGTGTTTTTAAAGATAAAGAGCTCTACGAGAAGGTGTTCGGCGACGATGAGAAGCTGAAGAAATTCCTCCGGTGGAGA GTTCAGGTGCTGGAAAGGGGAATCAATCTCCTGCATTTTAGGCCTAACGGCGTTAATTCGATTATTCAAGTTACCGATATGAAGGACATGCCGAAGAAGG AGCTCCGAGTTGCTTCCAATCATATCCTTTCTCTGTTTCAAGATAACTACCCTGAGATGGTGGCTCGTAAGATTTTTATAAACGTGCCGTGGTACTTCAG TGTGCTGTACTCAATGTTCAGCCCGTTCTTGACGCAGAGGACGAAGAGCAAGTTCGTCATTTCTAAAGAAGGGAATGTTGCTGAGACTCTGTACAAATTC ATAAAGCCAGAAGATGTACCAGTTCAGTATGGAGGCTTGAGTCGACCAGGCGATCGGCACAACGACCCGCCCAAACCAGCTTCCGAGTTTTCGATCAAAG GAGGGGAGAAAGTTAACATCCAGATCGAAGGCATCGAGGCGGGTGCTACGATTACGTGGGACATAGTGGTGGGAGGATGGGAGGTGGAGTACAGAGCGGA GTTCGTTCCGAATGCGGAAGGAAGCTACACGATTGCGGTGGAGAAGTCGAGGAAGGTCGGAGGTAACGAGGAGGCGATCCATAACTCGTACACTGCTAGA GAAGGGGGGAAGATGGTGCTCTCTGTTGATAACTCTGTTTCCAGGAGAAGGAAGGTCGCTGCTTACCGGTACTTTGTGCGCAAATCCGCTGTCGTTTAG
AA sequence Show only first row Show all	>Lus10001269 pacid=23166954 polypeptide=Lus10001269 locus=Lus10001269.g ID=Lus10001269.BGIv1.0 annot-version=v1.0 MDSLPAAAIPPPPPQDSTSVAAAASPKPPPYKKTLVNSLMEAASTLKTPSFKEDNYLTSNLKPTEKKALQDLKDKLSAASADASDGVIGATMWGIDLLSS TDEKATVILLKFLRARDFRVAESFQMISKCLSWRKEFGADSVVEEDLGFKELEGVVAYMQGFDREGHPVCYNAYGVFKDKELYEKVFGDDEKLKKFLRWR VQVLERGINLLHFRPNGVNSIIQVTDMKDMPKKELRVASNHILSLFQDNYPEMVARKIFINVPWYFSVLYSMFSPFLTQRTKSKFVISKEGNVAETLYKF IKPEDVPVQYGGLSRPGDRHNDPPKPASEFSIKGGEKVNIQIEGIEAGATITWDIVVGGWEVEYRAEFVPNAEGSYTIAVEKSRKVGGNEEAIHNSYTAR EGGKMVLSVDNSVSRRRKVAAYRYFVRKSAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	1.4	0.9247
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	2.4	0.9166
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	3.2	0.8904
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	3.9	0.9118
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	3.9	0.9078
AT3G15040			Protein of unknown function, D...		Lus10021309 [exp]	8.8	0.8895
AT1G11120			unknown protein		Lus10018564 [exp]	8.9	0.8983
AT2G39870			unknown protein		Lus10040247 [exp]	9.9	0.9042
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	10.2	0.8614
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	11.2	0.9046

Compare expression of checked genes

Lus10001269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.