Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17910 407 / 4e-139 transferases, transferring acyl groups (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093300 [exp] 544 / 0 AT4G17910 400 / 1e-136 transferases, transferring acyl groups (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06423 [flax] [poplar] GWT1 GWT1
Representative CDS sequence Show only first row Show all	>Lus10001270 pacid=23166376 polypeptide=Lus10001270 locus=Lus10001270.g ID=Lus10001270.BGIv1.0 annot-version=v1.0 ATGGGTTCCGTCTCAAATTCGCTCAATCGTCACAAGCATCTCAAGGAAGAATTCGTGAGCAACTTGAATGGGTCGTCAATGCTCGAGATCGCGTCGCTTT CCACTATCGTACCTGCTCTGTTCCTACTGCGACGCGCGTTCTGCAACAGTTACAGGAATGATGAAGCGGGGGTGTCGAGAAAGAAAGATGATGATGCAGT TTCTGTATCCAGGAAGTTGGGAGCTTACCTCGCAGTGATTTCTTTGGATTTTCTGTTCCTTATGGTGCCAACTCTTCTGGCTCTCACTGTTCTTGCAGAA TGGGCATACGTTTTGGCCATCTTTTTGGCGGTGGTGATGTTGTCTCTGGCAGCTAAAAGGTTTACTTCATATGCATCAAGTTCCGGAACGCCCACTCAGC TTAGGACAAATATTTCAGCATACAGGGTGAACGTGATGATCGTGACTTGCATGTGCATCTTGGCTGTTGATTTCACAATATTTCCCAGAAGATATGCAAA GACGGAAACTTATGGTACTAGCTTGATGGATCTTGGAGTCGGCTCCTTTATAGTGACAAATGCTCTGGTGTCACGGCAAGCACGTGGCATATCATCCATG AATTGGAAGGCTGCAATTAAATCATCTAGCCCACTACTGGTACTAGGATTTGCACGCGTGCTGTCTACAAGAAGTGTGGACTATCAGGTGCATGTTGCAG AATATGGGGTTCACTGGAATTTCTTCTTCACACTGGCAGCTGTTACCATTCTCACATCCATCATAAGTATTCCTCCAAAGTACTCTGGAACCCTGGGTTT ATTACTTCTTGTAGGTTACCAGTGGTGGTCGGTTAATGGTTTGAACTTATATTTGTTATCGAATGAGAGGGGGACTGATCTCTTGAGCCAAAATAAGGAG GGATTATTCAGCATACTAGGATATTGGGGCATCTATCTTCTGGGGGTCCAGTTGGGCCACTATCTCTTCTTCGGAAACCAGAAAGCTCAGTTGAGAAGCA ACAGATGGACAACGATTAAAGTCTCAGGCCTTTCCATTATTTTCTGGCTAATTACTGCAATTTTAGATGGCCATGTTGAAAGAGCTTCCCGTAAGATGTG CAACCTGGCTTATGCTACCCTGGTGTTGGCTCAAAATCTTCAGGTTCTAGCAATACTAATGCTTTCAGATTGCATTGGTGTAAGTAGTATTTCCACGCTT GAAGAAGCAATCAATCGGAATTTGCTTGGAACGTTCCTTTTGGCAATCAGACAAAGTGAGGACCTCAAAAGGTCAAAACAGGGCAGAATCCAGAATTGCC AATGGAGGTTTCAGTTTGAGGGCGGGATGACTGGTAAATTGTACTTTTGGGAAAAGGAACCTGTTGAAGGTCACATGGATTCTGTGCAGTTCGTACAGAT TGATGACAGGCTTTGGACCACAGTCCACGGGGTATCCAGCTCCATCACCCAACAGTAG
AA sequence Show only first row Show all	>Lus10001270 pacid=23166376 polypeptide=Lus10001270 locus=Lus10001270.g ID=Lus10001270.BGIv1.0 annot-version=v1.0 MGSVSNSLNRHKHLKEEFVSNLNGSSMLEIASLSTIVPALFLLRRAFCNSYRNDEAGVSRKKDDDAVSVSRKLGAYLAVISLDFLFLMVPTLLALTVLAE WAYVLAIFLAVVMLSLAAKRFTSYASSSGTPTQLRTNISAYRVNVMIVTCMCILAVDFTIFPRRYAKTETYGTSLMDLGVGSFIVTNALVSRQARGISSM NWKAAIKSSSPLLVLGFARVLSTRSVDYQVHVAEYGVHWNFFFTLAAVTILTSIISIPPKYSGTLGLLLLVGYQWWSVNGLNLYLLSNERGTDLLSQNKE GLFSILGYWGIYLLGVQLGHYLFFGNQKAQLRSNRWTTIKVSGLSIIFWLITAILDGHVERASRKMCNLAYATLVLAQNLQVLAILMLSDCIGVSSISTL EEAINRNLLGTFLLAIRQSEDLKRSKQGRIQNCQWRFQFEGGMTGKLYFWEKEPVEGHMDSVQFVQIDDRLWTTVHGVSSSITQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17910			transferases, transferring acy...		Lus10001270 [exp]	0	1
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	3.0	0.8317
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	9.5	0.8030
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	12.0	0.7697
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	12.8	0.7946
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	20.5	0.7958
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	35.5	0.7652
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	48.2	0.7120
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	57.5	0.7341
AT1G51980			Insulinase (Peptidase family M...		Lus10025839 [exp]	71.7	0.6769
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	81.1	0.6568

Compare expression of checked genes

Lus10001270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.