Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46690 186 / 1e-56 bHLH bHLH071 beta HLH protein 71 (.1) AT1G72210 179 / 6e-54 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 174 / 2e-52 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 142 / 1e-39 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 134 / 6e-37 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46810 127 / 7e-34 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 125 / 8e-34 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 120 / 6e-31 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 91 / 1e-21 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 94 / 2e-21 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009475 [exp] 432 / 5e-153 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 177 / 7e-53 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 174 / 1e-51 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 149 / 2e-41 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 145 / 2e-39 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 136 / 2e-36 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 129 / 2e-36 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 122 / 1e-33 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 92 / 9e-21 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093200 [exp] 248 / 5e-81 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.001G141100 [exp] 227 / 8e-73 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.002G101900 [exp] 198 / 2e-61 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 187 / 9e-57 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 175 / 4e-52 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 170 / 3e-50 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G071100 [exp] 166 / 7e-49 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 145 / 3e-40 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 145 / 4e-40 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 139 / 5e-38 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001271 pacid=23166372 polypeptide=Lus10001271 locus=Lus10001271.g ID=Lus10001271.BGIv1.0 annot-version=v1.0 ATGCTGTCTGCTGCAGCAGCTTCCTCTTCCAACGAGCTCGCCAACTTCATCGTCATCTACGACACCATCTCCGCCACCCCATGCACCTCCGACACGTACT ACTACCCCGACAATTTGGCTCCGGCGGCGCCGGCAGTGCTACCACCTCCTCCTCCTCCTCCTTCTCCGCCGGCGAAAGTGGCACGCGGAGGTGGGAATGA CGTCGGGAGGAGCAAGAAGAGGAGGAGGAAGGCGAGAGTTTGTAAGAACAAAGAGGAAGCGGAGACTCAGAGGATGACACACATTGCCGTTGAGAGGAAC CGGCGGAAGCTGATGAATGAACACCTCGCTCTCCTCAGATCCCTCATGCCTCCTTCCTATGTTCAACGGGGTGACCAAGCATCAATAGTTGCAGGAGCAA TCGAGTTCGTGAAGGAGCTAGAGCACTCACTACACTCCCTCCAAGCCAAAAAGCTCCACCACCCATCTCCACCAACTCCGCTATTTTCCCAGTTCTTCAA CCACACTAGTTCTATTACTACCCAAGACACCACTAACAACAGCAAGTCCACCAACTCCTTCAACAACACCAAGACAATCCTAACCACTTCATCATCATCA CCGTCATCGTCCTCCTCTAACGACGAAGATGACGGGATCGTGGGGATCGAGGTGACTCTGATCGAGACGCATGCGAATCTCCGGTTCCTCACAAGGAAGA GATCCACGAATCGTCGACCTTGGCAGCTCTCGAAGTTGGTTGGTGGGTTCCATGCGCTTCGTCTCAGTGTTCTTCACTTCAGCCTCACCACCGTTCATCC GTTTTCCCTCTACTCCATAAGCGCCAAGGTTGAAGAAGGATGCCAGCTGACTTCAGTAGACGACATAGCAGCGGCAGTGCATCACATGCTTAGACTAATC ATTGAGCAAGATGAAGAAGATCACCATCATGGCTCTTCTTCTCTTCTTCATCCTCATATCACCTGA
AA sequence Show only first row Show all	>Lus10001271 pacid=23166372 polypeptide=Lus10001271 locus=Lus10001271.g ID=Lus10001271.BGIv1.0 annot-version=v1.0 MLSAAAASSSNELANFIVIYDTISATPCTSDTYYYPDNLAPAAPAVLPPPPPPPSPPAKVARGGGNDVGRSKKRRRKARVCKNKEEAETQRMTHIAVERN RRKLMNEHLALLRSLMPPSYVQRGDQASIVAGAIEFVKELEHSLHSLQAKKLHHPSPPTPLFSQFFNHTSSITTQDTTNNSKSTNSFNNTKTILTTSSSS PSSSSSNDEDDGIVGIEVTLIETHANLRFLTRKRSTNRRPWQLSKLVGGFHALRLSVLHFSLTTVHPFSLYSISAKVEEGCQLTSVDDIAAAVHHMLRLI IEQDEEDHHHGSSSLLHPHIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	0	1
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	3.2	0.8489
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	4.2	0.8795
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	5.2	0.8888
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	6.5	0.8338
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	6.6	0.8691
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	10.5	0.8748
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	12.0	0.8671
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	12.4	0.8389
AT4G37190			unknown protein		Lus10001001 [exp]	13.2	0.8590
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	13.6	0.8303

Compare expression of checked genes

Lus10001271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.