Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06480 729 / 0 DEAD box RNA helicase family protein (.1) AT3G01540 644 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 634 / 0 DEAD box RNA helicase family protein (.1.2) AT1G55150 438 / 4e-142 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 436 / 7e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G42520 321 / 2e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 325 / 8e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58510 317 / 2e-95 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G47330 317 / 2e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 310 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009474 [exp] 1238 / 0 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10032133 [exp] 634 / 0 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 629 / 0 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 612 / 0 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10037646 [exp] 446 / 1e-144 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 445 / 2e-144 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 433 / 2e-138 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 430 / 2e-137 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 318 / 7e-96 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152400 [exp] 896 / 0 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.017G071400 [exp] 647 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 644 / 0 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 444 / 3e-144 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 441 / 7e-142 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 431 / 2e-137 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 330 / 4e-95 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 326 / 1e-93 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 313 / 1e-93 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 317 / 4e-93 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10001272 pacid=23166377 polypeptide=Lus10001272 locus=Lus10001272.g ID=Lus10001272.BGIv1.0 annot-version=v1.0 ATGGCGACGGCAGAATCTGCTTCGGCTGCTCTTGGGCCAGCTTATGCTCCAGAAGACCCTACACTGCCTAAGCCATGGACGGGATTGATTGATAGGAGCA CTGGCATGTTGTACTACTGGAATCCTGAGACCAATGTTACGCAGTATGAAAAGCCAGCTTCTGCTTTGCCTCCTCCCGCAACTGGCTCGACGCCTAAGTT GGCTCAGATACCAATGCCTCATTCTGCTCAACAAACTAATGGGATGGCGGGAGGTCATGGTGCTCAACAACAGCAGGGGCAACAATTCGGGCAAATTCAT TATCAGGGCCAACAATCGCAAGGGCAGCAGCAGATGAGTGCCTTCTCTCAACAGCCGCAGCAAGGGCAAGGCTTAGGACAGCCACAACAACATTCTTCGG TGCAGCATGTATCTAGCCAGCCGGGTTCACAACAACAGGGACTGCAAATGGGGCAGGTTGGTCAACAACAAGGGCAGTTTCAACCCCAAATGATGCAACA GCATCAGGGTCAGCATATGTTTTCACATATGGGACAGCAAATGCATCAACCTTCAGGCCAGCCTATGCCGCAGCAGTCAGGCCAGCCTATGCCGCAACAG CCAGGGCAGCCCATGCAGCAGCAGCCAGGCCAGTCCATACACCATCAGAGCTCACAGATGCCACAACCACAAGGACAGTTTTCATATCAGCAAATGCAGT ACACGCCTTATCAACAAAATGTTGGTCCCCCAGTGCAGCAGCAGTATGCTACCCAAATGAAACCTGCAATGGCTCGGCCAGAGGATGGTGATCTGCCACA GGGTGGCCAGGCTGGGTACCCTACATCTCAGTTTCATCATCCCACTGGTGGATCCTCAGCTCAAAACATGCCGATTGGGAACAAATCCCCGTTGATGCCT CCTGCAGGTGGTCACTTCAATCGAGGTCAGCAAGTCACAGGACCCTCCGGGCCCGATTTAGGACATAAACCACCGATTCAGAGGCATCAGAATCTCACAG GTCTGCCTGGTGCACATAATCAGCAACCTAATGTGCCTCCTGTTGGATTGAAGATGGGCCACGAAAATGCTCCTCCTAGGTCGGGCAATGACTACTACTT GAATCCAAAAATTGGAGGCTCCATGATGAGTCCAAACCAACCTAATGGTGCTCCTATGCCTATGGTAATGAATCAGCAGGATGGACGAATGGGTGGATCC CCATTTCCAAATTCCGGACCTGCTTATTCAGGTGGGCTTAGCTCACCTGGGCAGGGAATGCACAATGCATATAACCATGGAAATAGCAGCTCACAGTTTC CTGCTAGTGGGATGATGATTCCTCCATTCAGCGGCCCTGCAGACATGTGTAACATCTCGCCTGTTGATGCTTATCGCCAAAAGCATGAAGTTTCAACAAT GGGTGACAACGTTCCTGCTCCTTTCATGACATTTGAAGACACTGGTTTCCCTCCAGAGATATTGAGAGATATACATTCTGCTGGTTTCTTGTTTCCCACT CCAATCCAGGCGCAAACATGGCCAATTGCACTACAGAGCCGAGATATAGTTGCCATTGCAAAAACAGGTTCTGGGAAAACTCTCGGCTACTTAATCCCAG CATTTATTCTTCTAAGGCAGCGTCGGAACAATCCTCAGAATGGTCCCACAGTACTGGTTTTAGCACCAACTAGGGAGCTTGCCACACAAATCCAAGAGGA GGTTAATAAATTCGGTCGATCTTTTAGGGTGTCTTGCACGTGCCTGTATGGCGGTGCACCAAAGGGTCCTCAACTGAATGAACTAGAACGTGGAGCTGAT GTTGTTGTGGCAACTCCTGGTCGCCTTAACGACATCCTTGAAATGAAGAGGATTGATTTCCGTCAAATTTCACTACTCGTTCTTGATGAGGCAGATAGAA TGCTTGATATGGGATTCGAGCCTCAAATACGTAAGATTGTGAACGAGATACCCCCTAGGAGACAAACACTTATGTATACTGCAACTTGGCCAAAAGAAGT GAAGAAGATTGCAGGTGATCTTCTTGTCAACCCTGTTCAAGTCAACATTGGAAATGTTGATGAACTTGCTGCAAACAAATCCATCACTCAGTTTGTGGAA ATGGTACCCCATATGGAGAAGGAGAAGCGCTTAGACCAGATCTTAAGGTCACAAGAGAGAGGGTCAAAAGTCATTATCTTCTGTTCTACCAAGAGATTGT GTGACCAGCTAGCTAGAGGCATTTTGCGCCAGTTCGGGGCGAATGCAATACATGGGGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAACCAGTTCAG GAGTGGGAAGTCACCGATCTTAGTCGCCACTGATGTTGCTGCTCGTGGCCTCGACATTAAGGACATACGGGTTGTGGTTAATTACGATTTCCCGACTGCA ATTGAGGACTATGTGCATCGAATTGGTAGAACTGGAAGGGCAGGTGCAACCGGTGTGGCGTACACGTTCTTCTCCGAGCAGGACTGGAAGCACGCGCCGG ATTTGGTCAAAGTTTTGGAAGGAGCTAACCAGCAGGTGCCTCCAGCAGTGCGCGAGATTGCTTCACGTGGCGGTCCTGGTTCCGGTTTCATGAAAGACCG AGGTCCCATGAATCGTTTCGATCCTGGTCCTGGAGCCGCCGGTGGAGGCGGTCGCTGGGACGGTGGAGGTCGTGGCGGGGGATTTGGTGGCCGCGGTGGG ATGAGGGATGGAGGGTTCGGCGGACGAGGTGGAATGTCGAGGGACGGAGGGTTCGGCGGACGAGGTGGAATGCGTGATGAAGGATTCGGTGGACGTGGTG GAATGCGTGATGAAGGAGGATTCGGTGGGCGAGGTGGTGGAATGCGTGATGAAGTAGGATTCGGTGGACGAGATGGCCGAAACGACATGTTCGCTGGTCG TGGTGGGGGGAATAGAGGTCGAGGTGGTTTCGGTGGGACTGCCGGTTGGGGTAGAAACGAGCGGGGTCCACAAGACCGTTATGACAACAGAGGAGGACGC GTCGGTCGGGGCATGGGAAGATTCGATGGGAGGAGAGATATGAGTGGCGGAAGGAGTAGGGGTAGAAGCCCGAGCCGTAGCCGAAGTAGAAGCAGAAGTT GGAGCAGGAGTAGGAGCCGGAGCAGGAGTTGGTCCAGGGACCGCAGTCGAAGCTACAGTAGGAGTCGAAGCCCGAAAAGAAACCGTAGCTACAGCAGGAG TCCGCATCGTCGCAGTAGTCGTAGCTATAGCCGTAGCCCCGATGGAGGAAGCCGTAGCCCTACCCCCAAAAGATTCGTAAGACGTCAAAAGCAACGAGAG TCTCTGTTTGATGTGAAGGAGGTCCCAACGTCAGCTTCTGAACCAATGCTCTCTAACCCAACTTCGGATCCTGTTATGAACTCTGTTTCGGAGATGGAAC AAGTAGCCGTTGAGAATGCTGGACCACCACCGGGGGTGATTGCTGACGGGGAGGGACCTGAATCGGCAGCCGAAACTTGA
AA sequence Show only first row Show all	>Lus10001272 pacid=23166377 polypeptide=Lus10001272 locus=Lus10001272.g ID=Lus10001272.BGIv1.0 annot-version=v1.0 MATAESASAALGPAYAPEDPTLPKPWTGLIDRSTGMLYYWNPETNVTQYEKPASALPPPATGSTPKLAQIPMPHSAQQTNGMAGGHGAQQQQGQQFGQIH YQGQQSQGQQQMSAFSQQPQQGQGLGQPQQHSSVQHVSSQPGSQQQGLQMGQVGQQQGQFQPQMMQQHQGQHMFSHMGQQMHQPSGQPMPQQSGQPMPQQ PGQPMQQQPGQSIHHQSSQMPQPQGQFSYQQMQYTPYQQNVGPPVQQQYATQMKPAMARPEDGDLPQGGQAGYPTSQFHHPTGGSSAQNMPIGNKSPLMP PAGGHFNRGQQVTGPSGPDLGHKPPIQRHQNLTGLPGAHNQQPNVPPVGLKMGHENAPPRSGNDYYLNPKIGGSMMSPNQPNGAPMPMVMNQQDGRMGGS PFPNSGPAYSGGLSSPGQGMHNAYNHGNSSSQFPASGMMIPPFSGPADMCNISPVDAYRQKHEVSTMGDNVPAPFMTFEDTGFPPEILRDIHSAGFLFPT PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRQRRNNPQNGPTVLVLAPTRELATQIQEEVNKFGRSFRVSCTCLYGGAPKGPQLNELERGAD VVVATPGRLNDILEMKRIDFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVKKIAGDLLVNPVQVNIGNVDELAANKSITQFVE MVPHMEKEKRLDQILRSQERGSKVIIFCSTKRLCDQLARGILRQFGANAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVVNYDFPTA IEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAPDLVKVLEGANQQVPPAVREIASRGGPGSGFMKDRGPMNRFDPGPGAAGGGGRWDGGGRGGGFGGRGG MRDGGFGGRGGMSRDGGFGGRGGMRDEGFGGRGGMRDEGGFGGRGGGMRDEVGFGGRDGRNDMFAGRGGGNRGRGGFGGTAGWGRNERGPQDRYDNRGGR VGRGMGRFDGRRDMSGGRSRGRSPSRSRSRSRSWSRSRSRSRSWSRDRSRSYSRSRSPKRNRSYSRSPHRRSSRSYSRSPDGGSRSPTPKRFVRRQKQRE SLFDVKEVPTSASEPMLSNPTSDPVMNSVSEMEQVAVENAGPPPGVIADGEGPESAAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	0	1
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	1.4	0.9233
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	8.0	0.8646
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	8.1	0.8517
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	8.2	0.8752
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	9.9	0.8806
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	10.3	0.8977
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	15.2	0.8617
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	21.4	0.8619
AT3G53320			unknown protein		Lus10023170 [exp]	21.5	0.8527
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	22.9	0.8660

Compare expression of checked genes

Lus10001272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.