Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 140 / 6e-38 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06120 125 / 6e-33 Fatty acid desaturase family protein (.1) AT1G06080 125 / 9e-33 ADS1 delta 9 desaturase 1 (.1) AT1G06090 121 / 2e-31 Fatty acid desaturase family protein (.1) AT3G15870 120 / 1e-30 Fatty acid desaturase family protein (.1) AT1G06100 118 / 2e-30 Fatty acid desaturase family protein (.1) AT2G31360 115 / 6e-29 ADS2 16:0delta9 desaturase 2 (.1) AT1G06360 109 / 6e-27 Fatty acid desaturase family protein (.1) AT1G06350 108 / 2e-26 Fatty acid desaturase family protein (.1) AT5G27050 54 / 4e-09 MADS AGL101 AGAMOUS-like 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009470 [exp] 251 / 2e-81 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 181 / 1e-53 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10034969 [exp] 166 / 3e-50 AT3G15850 125 / 1e-35 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 171 / 1e-49 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 165 / 2e-47 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 162 / 4e-46 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10011488 [exp] 160 / 4e-45 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 159 / 4e-45 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 158 / 1e-44 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151700 [exp] 157 / 5e-44 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 156 / 1e-43 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151800 [exp] 155 / 4e-43 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.004G222200 [exp] 59 / 9e-10 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.015G077800 [exp] 58 / 2e-09 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001273 pacid=23166368 polypeptide=Lus10001273 locus=Lus10001273.g ID=Lus10001273.BGIv1.0 annot-version=v1.0 ATGGAAGGGAGTCTCAAATGGAGGCTGTGGGACAAGATCGCAGCCGTGTGCATAACGGCGACGCATCTGCTGGCACTTTGGTCGCCGTTTTGCTTCAGCT GGGCTGCGTTTCGGGTTGAGGCCGTGATCGGGGTCGTCACGGCACTCTTCCGCATCAACCTCTCTTACCAACGGCATCTCACCCACCGGAGCTTCAAGAT CCCCAAGTGGCTCGAGTACTTCTTCGCTTACCTTGGCGTTCACGCTCTTCAGGGAGATCCAATATTTTGGGTCAGCAACCATAGGTTTCATCATATTGGG AAAAGAGACAATATTAGTGATATAGAAAATCAAGCCTTTTATAGGTGGATTCGTTACACTTATTTCTTGCATCCCATGAGCCTTGCTATTCTTCTATACG CCATTGGTGGCACTTCCTATGTAATCTATGGAATGGCCTGGGAGCTCGAGACCCTGTGTGGCGTCACCGTCTGCGTCGTGTACAGGGGTAAAGACGGCAG AGTCAAGGCGTTGTGGCCGGAGGAGCCGGAGAAGGTTAGAGAAGCGATTGAGTCTTACAGGAATGCAGAGAAGAAGCAGAGGATCGAGGAGACGGTTCTG GAGCACTTGGAAGAGGGCGTGAAGAAGCAGGAGAAGAAGAAATTGAGGGCGTTGGGGAATAAGCTATCGAATTGGATTGACGGGCTTGGAGGGAATGATG AAGGTTTGAGGAATGCGGTTGGGTTTTTGGGTTCGAAGATTGAGGAATTGGAGGAGAGGATTAGAGTTTTGGATTTGGGTTTGAGGGAAAAAGAAGAAGA AGATAGAACGAGGAAAAGGGTGGTGATGACATCAATGGCGATTGAAGAACTTGGAGATGGATTTGCCGTTGGTGGTGAGTCTTCGGATTCGTCGTCCGAT GGGGTTTCTCGGCAAGTTTTGATGGATTTGTTTCCGGACAACATTAATGGCGGTGGGTATGGTCAATTTCCTTTGCAGGAACAGAGCATCCAAGAAGAAG TTGGCGATGACTATGGATTGGGAGCTGCGGGTAGCAGTGATCGTGATCGGGGGATTCCGATGAGTAATGAAGCTATGAGATCGTCGGTGAACTCTCCGTT TGGTTGCTGCGGCGGCGGCGGGGTTGATTTTGGGCTGTATGAAACGGTGCCGATTTCAGTGTGGAATCCTCAGCACCAAACCGGATTTGGTAGTGATGGT CAACCGGGTGATTTCGTTTTCGGTCTTTGA
AA sequence Show only first row Show all	>Lus10001273 pacid=23166368 polypeptide=Lus10001273 locus=Lus10001273.g ID=Lus10001273.BGIv1.0 annot-version=v1.0 MEGSLKWRLWDKIAAVCITATHLLALWSPFCFSWAAFRVEAVIGVVTALFRINLSYQRHLTHRSFKIPKWLEYFFAYLGVHALQGDPIFWVSNHRFHHIG KRDNISDIENQAFYRWIRYTYFLHPMSLAILLYAIGGTSYVIYGMAWELETLCGVTVCVVYRGKDGRVKALWPEEPEKVREAIESYRNAEKKQRIEETVL EHLEEGVKKQEKKKLRALGNKLSNWIDGLGGNDEGLRNAVGFLGSKIEELEERIRVLDLGLREKEEEDRTRKRVVMTSMAIEELGDGFAVGGESSDSSSD GVSRQVLMDLFPDNINGGGYGQFPLQEQSIQEEVGDDYGLGAAGSSDRDRGIPMSNEAMRSSVNSPFGCCGGGGVDFGLYETVPISVWNPQHQTGFGSDG QPGDFVFGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001273 [exp]	0	1

Compare expression of checked genes

Lus10001273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.