Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76680 544 / 0 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G76690 530 / 0 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G09400 458 / 2e-162 FMN-linked oxidoreductases superfamily protein (.1) AT2G06050 367 / 2e-125 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G18020 358 / 6e-124 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 358 / 6e-124 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001276 [exp] 564 / 0 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 532 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001274 [exp] 496 / 4e-177 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10013218 [exp] 491 / 2e-174 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10028663 [exp] 361 / 6e-123 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 355 / 2e-120 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10030737 [exp] 233 / 2e-74 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102700 [exp] 548 / 0 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 546 / 0 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 545 / 0 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 539 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 535 / 0 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004600 [exp] 504 / 5e-180 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004200 [exp] 504 / 1e-179 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.006G142800 [exp] 360 / 1e-122 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 353 / 3e-120 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 352 / 1e-119 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10001275 pacid=23166366 polypeptide=Lus10001275 locus=Lus10001275.g ID=Lus10001275.BGIv1.0 annot-version=v1.0 ATGGAAGACGAAGCACCAAAGATTCCTCTTCTCACCCCATTCAGGATGGGAAAGTTCAGTCTTTCTCATAGGATTGTTCTGGCGCCATTGACAAGAGAGA GATCTTATGGCAATATCCCACAGAAACATGCCGTCTTGTATTACTCACAGAGGACTACCAAAGGAGGTCTTCTCATATCTGAAGCCACTGGAGTATCTGA TACTGCACAAGGGTATAAAGATACGCCTGGAATCTGGACCAAGGAGCAAATTGAGGCATGGAAGCCTATTGTGGATGCTGTTCATGCCAAAGGCGGCATA TTCTTCTGCCAACTTTGGCATGTTGGCCGGGTTTCGAATTCAGGTTTCCAGCCAAATGGTGAGGCACCAGTATCGTGTACAGACAAGCCATTGATCTCTC GATCGGGTAATGCAAACAGATTCACCCCTCCAAGACGATTACGAACAGAAGAAATCCCTCGAATCGTCGAGGATTTCAGAGTTTCCGCCATGAATGCTAT TGAAGCGGGTAGGCTGATATCCATCTCGAGCTTTCGAATTGTTCCAAAGTTTGTAGCATTTTCACCACCTCCATTTGCAGGGTTTGACGGAGTTGAGATA CACGGAGCACATGGCTACCTAATCGAGCAGTTCACCAAAGACCAATCGAACGACAGAACAGACCAGTACGGTGGCTCCCGGGAGAATTGTTGTCGATTTG TCCTAGAGATAGTCGAAGCTGTAAGTAACGCGATAGGACCGGACCGAGTAGGGATCAGGCTGTCCCTATTCGGACCGTACAACCAATGCACGGATTCAAA CCCGGAAGCTTTAGGTCTTTACATGGCCAAATCGCTCAACAAACTCGGGATCTCCTACTGTCACATGGTCGAACCGCGACAGAAGAAGACTGAACAATTG TGTCAAAGTCAACTGTTGCCTGTGAGAAAAGCTTTCAAGGGTGCTTTTATTGCTGCGAATGGGTTTGATAGGGAAGAAGGGAATCGAGTTGTGGAAGAGG ATCAAACCGATTTGGTTGCTTATGGTCGGTTGTTCTTGGCTAATCCTGATCTGCCAAGGAGATTTGAGCTTGATGCTCCTCTAAACCAGTGTGATACAAG TACTTTTTATGTTTCAGATCCTGTTGTTGGGTATACTGATTATCCTTTTTTGGAGGCTAATCCTTCTGTTTGA
AA sequence Show only first row Show all	>Lus10001275 pacid=23166366 polypeptide=Lus10001275 locus=Lus10001275.g ID=Lus10001275.BGIv1.0 annot-version=v1.0 MEDEAPKIPLLTPFRMGKFSLSHRIVLAPLTRERSYGNIPQKHAVLYYSQRTTKGGLLISEATGVSDTAQGYKDTPGIWTKEQIEAWKPIVDAVHAKGGI FFCQLWHVGRVSNSGFQPNGEAPVSCTDKPLISRSGNANRFTPPRRLRTEEIPRIVEDFRVSAMNAIEAGRLISISSFRIVPKFVAFSPPPFAGFDGVEI HGAHGYLIEQFTKDQSNDRTDQYGGSRENCCRFVLEIVEAVSNAIGPDRVGIRLSLFGPYNQCTDSNPEALGLYMAKSLNKLGISYCHMVEPRQKKTEQL CQSQLLPVRKAFKGAFIAANGFDREEGNRVVEEDQTDLVAYGRLFLANPDLPRRFELDAPLNQCDTSTFYVSDPVVGYTDYPFLEANPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001275 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	1.4	0.9726
					Lus10018893 [exp]	3.5	0.9631
					Lus10027915 [exp]	8.4	0.9566
AT5G62750			unknown protein		Lus10042178 [exp]	10.6	0.9524
					Lus10018894 [exp]	11.1	0.9582
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	13.0	0.9575
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	16.4	0.9523
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	16.9	0.9542
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	17.0	0.9572
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	18.5	0.9580

Compare expression of checked genes

Lus10001275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.