Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76680 587 / 0 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G76690 583 / 0 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G09400 504 / 1e-180 FMN-linked oxidoreductases superfamily protein (.1) AT2G06050 392 / 8e-136 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G18020 375 / 8e-131 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 375 / 8e-131 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009473 [exp] 560 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 550 / 0 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001274 [exp] 526 / 0 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10013218 [exp] 517 / 0 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10028663 [exp] 379 / 2e-130 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 375 / 5e-129 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10030737 [exp] 245 / 2e-79 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102700 [exp] 608 / 0 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 582 / 0 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 576 / 0 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 572 / 0 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 571 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004600 [exp] 545 / 0 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004200 [exp] 544 / 0 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.006G142800 [exp] 379 / 2e-130 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 373 / 5e-128 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 368 / 3e-126 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10001276 pacid=23166375 polypeptide=Lus10001276 locus=Lus10001276.g ID=Lus10001276.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCATCTCCAGCAATTCCTCTCCTGAGCCCACACAAGATGGGCAAGTTCGATCTTTCTCATAGGATTGTTCTGGCGCCGTTGACAAGAGAGA GGTCTTATGGCAATATCCCACAGAAACATGCCGTCTTGTATTACTCACAGAGGACTACCAATGGAGGTCTTCTCATAGCTGAAGCCACTGGAGTATCTGA TACTGCACAAGGGTATAAGGATACGCCTGGAATCTGGACCAAGGAGCAAGTAGAGGCATGGAAGCCAATTGTGGATGCGGTTCATGCCAAGGGTGGCATA TTCTTCCTTCAGATTTGGCACGTCGGGAGGGTTTCGAATTCGGGTTATCAACCAAATGGGCAGTCTCCAATTTCGTCTACAGACAAGCCATTGACCCCTC AAATCCGAGCTAACGGAATCTCCGTAGCAGAATTCACACCTCCAAGACGATTAACGACACAAGAAATCCCCCACGTCATCAACGACTTCAGAGTCGCAGC GAAGAACGCTATCGAAGCAGGGTTTGATGGGGTCGAGATACACGGTGCTCATGGCTACCTGATCGACCAGTTCCTGAAAGACTCGGTCAATGATCGAACC GACCAGTACGGTGGGTCCCTTCCAAATCGTTGCCGGTTCGCACTAGAAATAGTCGAAGCCATAAGCAACGAGATAGGCGCAGACAGAGTCGGAATGAGAC TATCTCCCTTTGCAAACTACTCGGAAAGTGGCGACTCTAGCCCCGAAGCTCTAGGACTTTACATGGCCGAATCTTTGAACCGATTCGGGATTGCTTACTG TCACATGGTCGAGCCTCGAATGAAGTCATTGGCTGAAAAGTCTCACACTCCTCAGAGTCTCCTCCCCATGAGGAAAGCTTTCAAGGGAACATTCATTTCC GCTGGTGGTTATGGCAAAGAAGACGGGAACCGAGCTGTTGAGGAAGACCATACTGATCTAGTCGCTTATGGCCGGTTGTTCTTGGCGAATCCTGATTTGC CGAGGAGATTCGAGCTCGATGCACCTCTCAATGAGTATGTTAGAGATACATTTTACATATCTGATCCTGTTGCTGGGTACACCGACTATCCTTTCCTGGA TTGA
AA sequence Show only first row Show all	>Lus10001276 pacid=23166375 polypeptide=Lus10001276 locus=Lus10001276.g ID=Lus10001276.BGIv1.0 annot-version=v1.0 MAAPSPAIPLLSPHKMGKFDLSHRIVLAPLTRERSYGNIPQKHAVLYYSQRTTNGGLLIAEATGVSDTAQGYKDTPGIWTKEQVEAWKPIVDAVHAKGGI FFLQIWHVGRVSNSGYQPNGQSPISSTDKPLTPQIRANGISVAEFTPPRRLTTQEIPHVINDFRVAAKNAIEAGFDGVEIHGAHGYLIDQFLKDSVNDRT DQYGGSLPNRCRFALEIVEAISNEIGADRVGMRLSPFANYSESGDSSPEALGLYMAESLNRFGIAYCHMVEPRMKSLAEKSHTPQSLLPMRKAFKGTFIS AGGYGKEDGNRAVEEDHTDLVAYGRLFLANPDLPRRFELDAPLNEYVRDTFYISDPVAGYTDYPFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	1.7	0.9905
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	2.4	0.9888
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	3.7	0.9902
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	5.0	0.9875
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	6.0	0.9840
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	7.2	0.9886
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	7.3	0.9847
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	8.3	0.9797
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	9.5	0.9873
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	10.2	0.9871

Compare expression of checked genes

Lus10001276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.