Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71692 205 / 9e-68 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT2G03710 110 / 8e-31 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G69120 108 / 3e-29 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT4G09960 107 / 4e-29 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G45660 103 / 7e-28 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT1G24260 104 / 9e-28 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 103 / 2e-27 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 103 / 2e-27 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT5G60910 102 / 4e-27 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G58780 102 / 5e-27 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009472 [exp] 256 / 4e-88 AT1G71692 204 / 3e-67 XAANTAL1, AGAMOUS-like 12 (.1) Lus10003125 [exp] 110 / 8e-31 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005302 [exp] 111 / 4e-30 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 110 / 1e-29 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 108 / 3e-29 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003124 [exp] 107 / 7e-29 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026679 [exp] 105 / 2e-28 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10009481 [exp] 106 / 6e-28 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10004637 [exp] 103 / 7e-28 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102600 [exp] 218 / 4e-73 AT1G71692 250 / 4e-85 XAANTAL1, AGAMOUS-like 12 (.1) Potri.019G076800 [exp] 213 / 7e-71 AT1G71692 237 / 9e-80 XAANTAL1, AGAMOUS-like 12 (.1) Potri.019G077200 [exp] 120 / 4e-34 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.013G104900 [exp] 113 / 2e-31 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.003G169600 [exp] 112 / 6e-31 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 111 / 2e-30 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G064300 [exp] 110 / 3e-30 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.010G154100 [exp] 107 / 7e-29 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.004G115400 [exp] 105 / 3e-28 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.012G062300 [exp] 105 / 3e-28 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10001277 pacid=23166379 polypeptide=Lus10001277 locus=Lus10001277.g ID=Lus10001277.BGIv1.0 annot-version=v1.0 ATGGCTAGAGGGAAGGTTCAGATGAAGAGGATCGAGAATCCGGTGCATAGACAGGTGACCTTCTGCAAGCGTAGAGCTGGTTTGCTGAAGAAGGCTAAGG AGCTTTCTGTGCTTTGTGATGCTGAGATTGGTGTCCTTGTTTTTTCTTCCCATGGGAAGCACTATGAGCTTGCCACCAAAGGAACAATGCAAGGGCTCAT AGACAAGTACATGAAATGCAGCCCGGGTTCCGGTTCCGGTTCTAGTTCTGGTTCGGACTCGGGTGCGGCTCAGCCAGTTGTGGAATCCAAGGACCCGAAC CAGCAGAATGCCAAAGAAGAGATCAACATGCTGAAGCAAGAGATCCAAATGCTGCAGAAAGGGCTCAGGTATATGTTTGGAGGAGGAGACTCAGAAATGA CATTGGAGGAGCTGCTGGTGCTTGAAAAACATCTTGAGATTTGGGTTTGCCAGATTCGCTCAACTAAGATGGAGATCATGTTTAAAGAAATTCAACAGTT GAGGAACAAGGTTTGTCTCTCTTCCTACAAAGCTAGTTAA
AA sequence Show only first row Show all	>Lus10001277 pacid=23166379 polypeptide=Lus10001277 locus=Lus10001277.g ID=Lus10001277.BGIv1.0 annot-version=v1.0 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVLVFSSHGKHYELATKGTMQGLIDKYMKCSPGSGSGSSSGSDSGAAQPVVESKDPN QQNAKEEINMLKQEIQMLQKGLRYMFGGGDSEMTLEELLVLEKHLEIWVCQIRSTKMEIMFKEIQQLRNKVCLSSYKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10001277 [exp]	0	1
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	2.8	0.6990
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	3.2	0.6984
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	36.1	0.6151
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	38.7	0.6870
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	42.1	0.6655
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	44.3	0.6556
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020730 [exp]	45.3	0.6678
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	51.6	0.6302
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	58.6	0.6466
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	59.0	0.5947

Compare expression of checked genes

Lus10001277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.