Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 387 / 9e-135 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT2G31360 342 / 8e-118 ADS2 16:0delta9 desaturase 2 (.1) AT1G06080 334 / 1e-114 ADS1 delta 9 desaturase 1 (.1) AT3G15870 335 / 2e-114 Fatty acid desaturase family protein (.1) AT1G06360 327 / 5e-112 Fatty acid desaturase family protein (.1) AT1G06120 327 / 5e-112 Fatty acid desaturase family protein (.1) AT1G06100 327 / 7e-112 Fatty acid desaturase family protein (.1) AT1G06350 321 / 8e-110 Fatty acid desaturase family protein (.1) AT1G06090 318 / 8e-109 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009469 [exp] 633 / 0 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 475 / 7e-170 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 473 / 3e-169 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 469 / 1e-167 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 430 / 3e-152 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 401 / 1e-141 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10011488 [exp] 387 / 2e-134 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10023128 [exp] 364 / 2e-125 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 330 / 2e-113 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151800 [exp] 379 / 4e-131 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151700 [exp] 377 / 2e-130 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 375 / 6e-130 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10001279 pacid=23166374 polypeptide=Lus10001279 locus=Lus10001279.g ID=Lus10001279.BGIv1.0 annot-version=v1.0 ATGGCAACGAGAGAATTAGAAGCCATACGTGAGCAACAAATGAAGAGCAATAACGACGGCCAAATGCCAACACAAATTTTAGTGACGGCGAAACAACAAA GGATTAATAGCGACAATAACAGCAAACCCCGTCGAGAAAGGAAACTGAACGCGTACGACAAAATCGCCGTCTCTAGTGTTTTCGGCGCACATTTGCTGGC TCTGTGCGCACCGTTTTGCTTCAGCCGGGATGCATTTTGGCTGTCATTTTCTCTTTATGTAGTTACGGGTCTCTTCGGCATTTGCTTCTCCTACCATAGG AACCTCGCCCACCAGAGCTTCAAGGTCCCGAAATGGCTCGAGTACTTGTGCGCTTACTTCGGTGCACACGCGCTTCAGGGAGATCCGATGACGTGGGTTA GTAACCACAGGTTTCATCATCAGTACACTGATACGGAGAGAGATCCTCATAGCCCGATCGAAGGGTTCTGGCATAGCCATATGAGCTGGATTTTCGACTC GGGAGCTATTAGAGAGAAGTGCGGGAAACGAGACAATGTCGGAGACCTAAAAAGCCAAGCATTCTATAGGTGGATTCGTAGGACTTATGTGTTCCACCCA TTGGGTCTAGCCATTCTCCTCTACACCATTGGTGGATTTCCATACATAGTTTGGGGCATTGGAGTGAGAGTGGTGGGGTTTTACCACGCCACATGGTTTG TCAACTCAGCTGCTCACATATGGGGAGGTCGAGCTTGGAACACCAACGACTTGTCAAGAAACAACTGGTGGGTGGCGGTTCTGACATTTGGAGAAGGTTG GCACAACAACCACCATGCATTCAAGTACTCGGCGAGGCAAGGGCTCGAATGGTGGCAAATTGACATAACTTGGTATACCGTGAGATTCCTCAAAACCCTA GGATTTGCTTATGATATCAAGCTCCCGAGTCCGGTCCAAATGCAGAAGTTGGCCATTGTCAAGAGCTGA
AA sequence Show only first row Show all	>Lus10001279 pacid=23166374 polypeptide=Lus10001279 locus=Lus10001279.g ID=Lus10001279.BGIv1.0 annot-version=v1.0 MATRELEAIREQQMKSNNDGQMPTQILVTAKQQRINSDNNSKPRRERKLNAYDKIAVSSVFGAHLLALCAPFCFSRDAFWLSFSLYVVTGLFGICFSYHR NLAHQSFKVPKWLEYLCAYFGAHALQGDPMTWVSNHRFHHQYTDTERDPHSPIEGFWHSHMSWIFDSGAIREKCGKRDNVGDLKSQAFYRWIRRTYVFHP LGLAILLYTIGGFPYIVWGIGVRVVGFYHATWFVNSAAHIWGGRAWNTNDLSRNNWWVAVLTFGEGWHNNHHAFKYSARQGLEWWQIDITWYTVRFLKTL GFAYDIKLPSPVQMQKLAIVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	0	1
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	9.3	0.9999
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	10.1	0.9980
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	10.7	0.9961
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	13.1	0.9999
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10023114 [exp]	14.8	0.9971
AT5G13620			unknown protein		Lus10017168 [exp]	16.1	0.9999
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	17.8	0.9976
					Lus10015929 [exp]	18.5	0.9999
					Lus10016593 [exp]	20.7	0.9999
AT3G49055			unknown protein		Lus10011651 [exp]	22.7	0.9999

Compare expression of checked genes

Lus10001279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.