Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17050 62 / 9e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G51560 59 / 1e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16860 56 / 8e-09 RPP5, RPP4 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 56 / 1e-08 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46520 55 / 2e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46510 55 / 2e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 52 / 2e-07 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G22690 50 / 6e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 50 / 1e-06 disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 50 / 1e-06 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042778 [exp] 244 / 4e-76 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024150 [exp] 204 / 9e-61 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 182 / 5e-53 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10015648 [exp] 183 / 3e-52 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010223 [exp] 178 / 9e-51 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017420 [exp] 167 / 9e-48 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017418 [exp] 152 / 2e-41 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10015649 [exp] 137 / 1e-39 AT1G69550 75 / 1e-15 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010221 [exp] 132 / 1e-34 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069200 [exp] 70 / 2e-13 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G031101 [exp] 62 / 7e-11 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001971 [exp] 62 / 1e-10 AT5G36930 427 / 3e-130 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G068300 [exp] 61 / 2e-10 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 61 / 2e-10 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T009323 [exp] 61 / 3e-10 AT5G36930 449 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 57 / 5e-09 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 57 / 6e-09 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G016425 [exp] 56 / 1e-08 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 55 / 2e-08 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001281 pacid=23166378 polypeptide=Lus10001281 locus=Lus10001281.g ID=Lus10001281.BGIv1.0 annot-version=v1.0 ATGTACACCTCTGCATATGCTAAGGTGAAGCATCTAATTGATAGAACCCTCTTAATTTGTGAAGGAAAGAATATCCAAGTGCATGGTCTGCTTAAGGAAC CGAAGTGGGGAAACGCAGCAGCCATAGAAATGGTGCTTCCGAAAAGGAAAAAAGCCAAAGTGGTAGACATTCCTTGGATTGGCAGTAATCCAAGCTTCAA ATGCCTGCCATCTAGCATCAGCAATACCAGTTCTCTCAAGTCGCTTAATTTCAAAAAGACTTCGAGTATTCTCGAATTGACGAGCCTTTACTCAATTGAT GTGAGCTACTGCAAGCGTTTCGAGTCAATGCCCACGGGTATCCATAAGCTTTCCAAGTTACGACGATTGGTAGTGTCCGGCTGTGACCGCATTCGATCTC TGCCACAACTCCCACCAAATCTGACAGAATTGTATGTAAATGGTTGCAAGTCTTTACAAGCTCTATCAAGCAACACAGGTAAGCTGTTGCATCTGAATAA ACTCTATTCTGAAGAATGCCCGCAATTGGGACAGACTATACCTGTCGAAATTTTGGCAAACTTCCTCGTTCATGCCAGCTTGTCTCCGGCACCTTGTGTG ATGTACTGGGAAGTTGTATGTTCAAGAAGCGAGCTTCCGGAATGGTTAACGTACAAAAGCATGAACACGATGAAGGAGGAGGGTTGCAGTGTAGAGGTGC AGTTGCCTCTTCCCAGCGACCGTGACCAACCAATGATTATGAACGGAATTGCATTCGCCGCTGTGTTTCCTTGCAACTCGATGGTGGAAATGAAATGA
AA sequence Show only first row Show all	>Lus10001281 pacid=23166378 polypeptide=Lus10001281 locus=Lus10001281.g ID=Lus10001281.BGIv1.0 annot-version=v1.0 MYTSAYAKVKHLIDRTLLICEGKNIQVHGLLKEPKWGNAAAIEMVLPKRKKAKVVDIPWIGSNPSFKCLPSSISNTSSLKSLNFKKTSSILELTSLYSID VSYCKRFESMPTGIHKLSKLRRLVVSGCDRIRSLPQLPPNLTELYVNGCKSLQALSSNTGKLLHLNKLYSEECPQLGQTIPVEILANFLVHASLSPAPCV MYWEVVCSRSELPEWLTYKSMNTMKEEGCSVEVQLPLPSDRDQPMIMNGIAFAAVFPCNSMVEMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10001281 [exp]	0	1

Compare expression of checked genes

Lus10001281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.