Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19070 485 / 6e-169 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 333 / 1e-109 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 258 / 2e-80 HXXXD-type acyl-transferase family protein (.1) AT3G48720 193 / 4e-56 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G41040 192 / 1e-55 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 188 / 3e-54 HXXXD-type acyl-transferase family protein (.1) AT1G65450 163 / 9e-45 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G17540 140 / 3e-36 HXXXD-type acyl-transferase family protein (.1) AT5G23940 139 / 1e-35 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT1G03390 136 / 6e-35 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005358 [exp] 541 / 0 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 541 / 0 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 439 / 9e-151 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1) Lus10021393 [exp] 389 / 2e-132 AT2G19070 327 / 5e-109 spermidine hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 319 / 2e-104 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 306 / 2e-99 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 302 / 9e-98 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 302 / 1e-97 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 268 / 2e-84 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165200 [exp] 533 / 0 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 533 / 0 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 335 / 1e-110 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 332 / 2e-109 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 329 / 3e-108 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 329 / 3e-108 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 325 / 2e-106 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 320 / 2e-104 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 199 / 3e-58 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 198 / 1e-57 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001282 pacid=23166384 polypeptide=Lus10001282 locus=Lus10001282.g ID=Lus10001282.BGIv1.0 annot-version=v1.0 ATGCCATCAATCACATCCATCTTTAAATACACTAATTTCCTCTCCAACATTTCCACTCGCAGCATCACAAACAACAACATCCATACTTCTCCACCAATCA ATCTCTCTATCTTCGTTCCTATGGGAAACTCTAATGATCACAAGCTCAAAATGAAGGTGACAATAAAAAACTCGTACATGGTCAAACCAGCCGAGTCGAC TTGGACCGGTCGACAAGCCCTAACCGAGTGGGACCAAATCGGGTCCATAACTCATGTCCCCACCGTCTACTTCTACAAGCCTTCTGCCCAATGGCTCACA CCATCCTCGTCGGTTCTCACCACTCTTGTCCACTCCCTTAGCCTTGCACTCGTCCCGTTCTACCCCCTCGCTGGGCGTGTGCACCGAACATATGGTGGGA GGATGGAGCTAGAGTGCAATGCTATGGGGGTAGAGTTCGTGGTGGCGGAATCGGATTGGAGACTCGAAGATTTTGGCGATGATTTTTCGCCATCGCCAAA TTTTGAGTCTTTGGTCCCGGAAGTGGATTATGACCTCCCCATCCATGATTGGCCTTTGCTCCTCCTCCAGTTGACCAAATACCAATGTGGCGGGATTAGT TTGACTTTCAACATTTGTCATGCCGTTGTGGATGGTCTTAGTGCTCTCCATTTCTTCTCAGAGTGGACCCGTATCGCTCGTGGAGAGCCGGTGAAAACGA TGCCGTTTCTTGATAGGACGGTACTTCGTGCTGGCATGCCACCTAGGCGACAACCGAAGTTTTCTCACACTGAGTTTGACCGTCCTCCTGGTCTCCTGCC GGATCTTTTGAATAATCAGAAGATTCGACAGGAAGATGTCAAATCACGGAAAAATAAAGTTGTGAAGACGTTTAAGTTGGCCACAACCAAGGTGGCCATG TTGAAGGACATGGCCAACAAGAACCACGGGGTCAAAATAGTAAATGGAGAAGATAAACAACAACGACCGTACACGACTTACGAGACGTTGACCGCCCACA TATGGAAATGCACATGCAAAGCACGCGACTTAAGCCCAGAGCAGCCAACTACTCTGGGCGTTTGCGTCGACTCCAGAAGTCGAATGCAACCCGCACTACC AAAAGGGTACTTTGGCAACGCGATCCTTGACGTGCAAGCCACCGCCCTGGCAGGCGAGCTCACATCAAGACCACTAGGATACGCTGCCAAGAAGATACGA GACACGATCGAGAAGGTGGATGCGGAGTTCCTGGACTCCGCAATCGACTTCCTCAAGTCGCAACCGGACCTGAGGAAGTACCAAGATTTCGGGTTGACCG AAGAAGAAGGGCCGTTCTTCGGGTACCCGAATCTCGGAGTGATCAGCTGGCTGAGGCTGCCGTTGTTCGGGATGGATTTCGGGTGGGGGAAAGAGATCTA CATGGGACCGGCCACGCACGATTTCGACGGGGACTCGATGATTTTGGCTAGCCAGAACGGGGACGGATCGGTGCTTGTTGCTATATGTTTGCGTGAGGAT CATATGGAGAGTTTCAAAAAGTGCTTTTACGAAGATATTATGTGA
AA sequence Show only first row Show all	>Lus10001282 pacid=23166384 polypeptide=Lus10001282 locus=Lus10001282.g ID=Lus10001282.BGIv1.0 annot-version=v1.0 MPSITSIFKYTNFLSNISTRSITNNNIHTSPPINLSIFVPMGNSNDHKLKMKVTIKNSYMVKPAESTWTGRQALTEWDQIGSITHVPTVYFYKPSAQWLT PSSSVLTTLVHSLSLALVPFYPLAGRVHRTYGGRMELECNAMGVEFVVAESDWRLEDFGDDFSPSPNFESLVPEVDYDLPIHDWPLLLLQLTKYQCGGIS LTFNICHAVVDGLSALHFFSEWTRIARGEPVKTMPFLDRTVLRAGMPPRRQPKFSHTEFDRPPGLLPDLLNNQKIRQEDVKSRKNKVVKTFKLATTKVAM LKDMANKNHGVKIVNGEDKQQRPYTTYETLTAHIWKCTCKARDLSPEQPTTLGVCVDSRSRMQPALPKGYFGNAILDVQATALAGELTSRPLGYAAKKIR DTIEKVDAEFLDSAIDFLKSQPDLRKYQDFGLTEEEGPFFGYPNLGVISWLRLPLFGMDFGWGKEIYMGPATHDFDGDSMILASQNGDGSVLVAICLRED HMESFKKCFYEDIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	0	1
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	1.4	0.9503
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	3.0	0.9499
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	5.4	0.9514
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	5.5	0.9326
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	6.3	0.9486
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	6.9	0.9455
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	7.7	0.9368
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	8.5	0.9394
AT3G07425			unknown protein		Lus10009587 [exp]	9.8	0.9353
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	9.9	0.9363

Compare expression of checked genes

Lus10001282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.